miRNA display CGI


Results 121 - 140 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 68180 0.69 0.641632
Target:  5'- --cGCGCGC-GCCgCGGGCCCCc--- -3'
miRNA:   3'- auuCGCGCGaUGGaGCUCGGGGcuug -5'
23699 3' -57.7 NC_005261.1 + 86196 0.69 0.641632
Target:  5'- cGAGCGgGCUccGCgUCGGcGCgCCGAACc -3'
miRNA:   3'- aUUCGCgCGA--UGgAGCU-CGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 19764 0.69 0.631325
Target:  5'- cGGGCGCGg-GCCcCGucGCCUCGAACa -3'
miRNA:   3'- aUUCGCGCgaUGGaGCu-CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 103279 0.69 0.621018
Target:  5'- -cAGCGCGCcgggUGCCgcgCGcAGCCCCGcgaAGCc -3'
miRNA:   3'- auUCGCGCG----AUGGa--GC-UCGGGGC---UUG- -5'
23699 3' -57.7 NC_005261.1 + 61405 0.69 0.621018
Target:  5'- cGGGCGCGUggugGCCUCGcaggaccuGGCCUCGcuGACc -3'
miRNA:   3'- aUUCGCGCGa---UGGAGC--------UCGGGGC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 120666 0.69 0.600438
Target:  5'- cGGGCGCGCcugugAUCUCGcgcgcGCCCCGGc- -3'
miRNA:   3'- aUUCGCGCGa----UGGAGCu----CGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 102445 0.7 0.558607
Target:  5'- -cGGCGCGCcgcccgGCCUCGgcgcgcaGGCgCCGGACc -3'
miRNA:   3'- auUCGCGCGa-----UGGAGC-------UCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 56612 0.7 0.59018
Target:  5'- cAAGCGCGCgcGCgUgGAGCCCCccAGCg -3'
miRNA:   3'- aUUCGCGCGa-UGgAgCUCGGGGc-UUG- -5'
23699 3' -57.7 NC_005261.1 + 68572 0.7 0.59018
Target:  5'- uUGAGCGCGUcGCCgccgaggCGGGCCgCGGGa -3'
miRNA:   3'- -AUUCGCGCGaUGGa------GCUCGGgGCUUg -5'
23699 3' -57.7 NC_005261.1 + 29876 0.7 0.59018
Target:  5'- -cGGCGcCGCUGCCgCcAGCgCCCGGGCc -3'
miRNA:   3'- auUCGC-GCGAUGGaGcUCG-GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 97002 0.7 0.579953
Target:  5'- cUAAGCGCGCcAUUgggCGGGCCgUCGGGCg -3'
miRNA:   3'- -AUUCGCGCGaUGGa--GCUCGG-GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 105948 0.7 0.579953
Target:  5'- cGAGCGCGCcgucgaugGCCUCGGcGCCCaGcGCg -3'
miRNA:   3'- aUUCGCGCGa-------UGGAGCU-CGGGgCuUG- -5'
23699 3' -57.7 NC_005261.1 + 51225 0.7 0.559619
Target:  5'- cUGGGCGCGCUagccGCCUgGAcGCUCCaGGCg -3'
miRNA:   3'- -AUUCGCGCGA----UGGAgCU-CGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 76605 0.7 0.539488
Target:  5'- --cGCGCGCUGCCgccCGccGCCCCGcuGCc -3'
miRNA:   3'- auuCGCGCGAUGGa--GCu-CGGGGCu-UG- -5'
23699 3' -57.7 NC_005261.1 + 5589 0.71 0.529515
Target:  5'- cGAGgGCGCccGCCUCGAGgCCCCc--- -3'
miRNA:   3'- aUUCgCGCGa-UGGAGCUC-GGGGcuug -5'
23699 3' -57.7 NC_005261.1 + 94609 0.71 0.51961
Target:  5'- cGAGCGCGCgcCCUCGccGCCgCCGGc- -3'
miRNA:   3'- aUUCGCGCGauGGAGCu-CGG-GGCUug -5'
23699 3' -57.7 NC_005261.1 + 129373 0.71 0.51961
Target:  5'- cGGGuCGCGCgGCUUCGGGuCCaCCGGGCu -3'
miRNA:   3'- aUUC-GCGCGaUGGAGCUC-GG-GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 46069 0.71 0.529515
Target:  5'- gAAGgGCGCcGCCUCGuGGCCggacaCGAGCa -3'
miRNA:   3'- aUUCgCGCGaUGGAGC-UCGGg----GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 102255 0.71 0.529515
Target:  5'- --uGCGCGCUcGCCUCcAGCgCCCGGu- -3'
miRNA:   3'- auuCGCGCGA-UGGAGcUCG-GGGCUug -5'
23699 3' -57.7 NC_005261.1 + 101900 0.71 0.529515
Target:  5'- --cGCGCGCUccuCCUCGAaagccgcguGCCCCcGGCg -3'
miRNA:   3'- auuCGCGCGAu--GGAGCU---------CGGGGcUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.