Results 61 - 80 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 97002 | 0.7 | 0.579953 |
Target: 5'- cUAAGCGCGCcAUUgggCGGGCCgUCGGGCg -3' miRNA: 3'- -AUUCGCGCGaUGGa--GCUCGG-GGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 105948 | 0.7 | 0.579953 |
Target: 5'- cGAGCGCGCcgucgaugGCCUCGGcGCCCaGcGCg -3' miRNA: 3'- aUUCGCGCGa-------UGGAGCU-CGGGgCuUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 51225 | 0.7 | 0.559619 |
Target: 5'- cUGGGCGCGCUagccGCCUgGAcGCUCCaGGCg -3' miRNA: 3'- -AUUCGCGCGA----UGGAgCU-CGGGGcUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 102445 | 0.7 | 0.558607 |
Target: 5'- -cGGCGCGCcgcccgGCCUCGgcgcgcaGGCgCCGGACc -3' miRNA: 3'- auUCGCGCGa-----UGGAGC-------UCGgGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 76605 | 0.7 | 0.539488 |
Target: 5'- --cGCGCGCUGCCgccCGccGCCCCGcuGCc -3' miRNA: 3'- auuCGCGCGAUGGa--GCu-CGGGGCu-UG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 92938 | 0.69 | 0.631325 |
Target: 5'- gGAGCa-GCUGCC-CGGcGUCCCGGACa -3' miRNA: 3'- aUUCGcgCGAUGGaGCU-CGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 19764 | 0.69 | 0.631325 |
Target: 5'- cGGGCGCGg-GCCcCGucGCCUCGAACa -3' miRNA: 3'- aUUCGCGCgaUGGaGCu-CGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 38523 | 0.69 | 0.631325 |
Target: 5'- --cGCGCGCUGgCUgCGcGCgCCGGGCa -3' miRNA: 3'- auuCGCGCGAUgGA-GCuCGgGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 55426 | 0.69 | 0.631325 |
Target: 5'- -cGGCugGCGCcACCgCGAGCCCucCGAGCg -3' miRNA: 3'- auUCG--CGCGaUGGaGCUCGGG--GCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 86196 | 0.69 | 0.641632 |
Target: 5'- cGAGCGgGCUccGCgUCGGcGCgCCGAACc -3' miRNA: 3'- aUUCGCgCGA--UGgAGCU-CGgGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 68180 | 0.69 | 0.641632 |
Target: 5'- --cGCGCGC-GCCgCGGGCCCCc--- -3' miRNA: 3'- auuCGCGCGaUGGaGCUCGGGGcuug -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 4914 | 0.69 | 0.631325 |
Target: 5'- -cGGCG-GCUGCCUCcgccgcGGCCgCGAGCg -3' miRNA: 3'- auUCGCgCGAUGGAGc-----UCGGgGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 103279 | 0.69 | 0.621018 |
Target: 5'- -cAGCGCGCcgggUGCCgcgCGcAGCCCCGcgaAGCc -3' miRNA: 3'- auUCGCGCG----AUGGa--GC-UCGGGGC---UUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 61405 | 0.69 | 0.621018 |
Target: 5'- cGGGCGCGUggugGCCUCGcaggaccuGGCCUCGcuGACc -3' miRNA: 3'- aUUCGCGCGa---UGGAGC--------UCGGGGC--UUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 61948 | 0.69 | 0.608662 |
Target: 5'- gGGGCGCGCgccgACCgcgucccccagcCGGGUCgCCGAGCu -3' miRNA: 3'- aUUCGCGCGa---UGGa-----------GCUCGG-GGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 120666 | 0.69 | 0.600438 |
Target: 5'- cGGGCGCGCcugugAUCUCGcgcgcGCCCCGGc- -3' miRNA: 3'- aUUCGCGCGa----UGGAGCu----CGGGGCUug -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 12019 | 0.69 | 0.600438 |
Target: 5'- gAAGCGCucgcccGCgacGCgCUCGAGCCCCagccgGAGCa -3' miRNA: 3'- aUUCGCG------CGa--UG-GAGCUCGGGG-----CUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 82000 | 0.69 | 0.600438 |
Target: 5'- --uGCGCGCUGCCgucgaaGAGCggCCCGuuGACg -3' miRNA: 3'- auuCGCGCGAUGGag----CUCG--GGGC--UUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 36648 | 0.69 | 0.600438 |
Target: 5'- -cGGCGCGCggGCUUgGGGCCaggguCGAACg -3' miRNA: 3'- auUCGCGCGa-UGGAgCUCGGg----GCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 80869 | 0.69 | 0.600438 |
Target: 5'- cAGGCGCGCUcaGCCgcgCGGGCUUC-AGCg -3' miRNA: 3'- aUUCGCGCGA--UGGa--GCUCGGGGcUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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