miRNA display CGI


Results 101 - 120 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 104282 0.68 0.662216
Target:  5'- -cGGCuGCGCggGCCUCGcAGgCCCGcGCg -3'
miRNA:   3'- auUCG-CGCGa-UGGAGC-UCgGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 105307 0.68 0.662216
Target:  5'- cGAGCGCGggGuCCUCGcacuccGCCCCGGc- -3'
miRNA:   3'- aUUCGCGCgaU-GGAGCu-----CGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 59111 0.68 0.6694
Target:  5'- cAGGCGCGCgcgagcuccccgGCCacCGAcucaggccggcgcGCCCCGGGCg -3'
miRNA:   3'- aUUCGCGCGa-----------UGGa-GCU-------------CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 132717 0.68 0.672475
Target:  5'- -cGGCGCcCUACCUCauugcggcGGCCCCGcACu -3'
miRNA:   3'- auUCGCGcGAUGGAGc-------UCGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 74952 0.68 0.672475
Target:  5'- cGGGCGCGCUcggcGCgCUCGAGgCCgCGcGCc -3'
miRNA:   3'- aUUCGCGCGA----UG-GAGCUCgGG-GCuUG- -5'
23699 3' -57.7 NC_005261.1 + 103437 0.67 0.72309
Target:  5'- --cGCGCGCgcgcGCCUCGcggucGGCCgCCGcGCc -3'
miRNA:   3'- auuCGCGCGa---UGGAGC-----UCGG-GGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 101537 0.67 0.72309
Target:  5'- --cGCGCGCcGCCUCG-GCCgCCa--- -3'
miRNA:   3'- auuCGCGCGaUGGAGCuCGG-GGcuug -5'
23699 3' -57.7 NC_005261.1 + 15287 0.67 0.732023
Target:  5'- gGGGCGCGCggucgcgGCCUCcGGGUCgucggagCCGGGCc -3'
miRNA:   3'- aUUCGCGCGa------UGGAG-CUCGG-------GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 72652 0.67 0.733012
Target:  5'- --uGgGgGCcGCCUCGGGCCCCcccGGCg -3'
miRNA:   3'- auuCgCgCGaUGGAGCUCGGGGc--UUG- -5'
23699 3' -57.7 NC_005261.1 + 20118 0.67 0.733012
Target:  5'- aAGGCGCGCggGCC-CGcagcGGCuCCgCGAGCg -3'
miRNA:   3'- aUUCGCGCGa-UGGaGC----UCG-GG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 117212 0.67 0.733012
Target:  5'- -cGGCGCGCccgcUGCCU-GGGCgCCGAGu -3'
miRNA:   3'- auUCGCGCG----AUGGAgCUCGgGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 94717 0.67 0.72309
Target:  5'- gGAGCGcCGCUACCUCcgGGGCggggacaCCGAc- -3'
miRNA:   3'- aUUCGC-GCGAUGGAG--CUCGg------GGCUug -5'
23699 3' -57.7 NC_005261.1 + 38345 0.67 0.72309
Target:  5'- gGGGCGCGCacGCCcagCGGGCCUUugGGGCg -3'
miRNA:   3'- aUUCGCGCGa-UGGa--GCUCGGGG--CUUG- -5'
23699 3' -57.7 NC_005261.1 + 28132 0.67 0.72309
Target:  5'- gAGGCGgGCgcCCUCGGcGCCCCc--- -3'
miRNA:   3'- aUUCGCgCGauGGAGCU-CGGGGcuug -5'
23699 3' -57.7 NC_005261.1 + 15897 0.67 0.72309
Target:  5'- cGGGCGCuuUAUCUCccGCCCCGcGCa -3'
miRNA:   3'- aUUCGCGcgAUGGAGcuCGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 11236 0.67 0.722093
Target:  5'- cGGGCGCGCUuccuCCUCGAucucgugGUCUCGGucGCu -3'
miRNA:   3'- aUUCGCGCGAu---GGAGCU-------CGGGGCU--UG- -5'
23699 3' -57.7 NC_005261.1 + 106919 0.67 0.713088
Target:  5'- -cGGCGCGCUGCa--GGGCCgCC-AGCg -3'
miRNA:   3'- auUCGCGCGAUGgagCUCGG-GGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 69637 0.67 0.713088
Target:  5'- --cGUGCGCUACCUgCGcGCCCuCGucAACc -3'
miRNA:   3'- auuCGCGCGAUGGA-GCuCGGG-GC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 43141 0.67 0.713088
Target:  5'- --cGCGCGCgcgGCCUgCGcGCCgCCGAc- -3'
miRNA:   3'- auuCGCGCGa--UGGA-GCuCGG-GGCUug -5'
23699 3' -57.7 NC_005261.1 + 120377 0.67 0.733012
Target:  5'- -cGGCGcCGCgcCCUCGcGCaCCGAGCa -3'
miRNA:   3'- auUCGC-GCGauGGAGCuCGgGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.