miRNA display CGI


Results 81 - 100 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 132447 0.68 0.651932
Target:  5'- aGAGCGCGUgccCCUCGGccGCCCUccGCg -3'
miRNA:   3'- aUUCGCGCGau-GGAGCU--CGGGGcuUG- -5'
23699 3' -57.7 NC_005261.1 + 130470 0.68 0.651932
Target:  5'- cGAGCG-GCUcgcggcguGCCUCGgcggcgagGGCCCCGAcgACg -3'
miRNA:   3'- aUUCGCgCGA--------UGGAGC--------UCGGGGCU--UG- -5'
23699 3' -57.7 NC_005261.1 + 107628 0.68 0.651932
Target:  5'- --cGUGCGCgggaaCUCGAGCgCCCGcGCu -3'
miRNA:   3'- auuCGCGCGaug--GAGCUCG-GGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 23483 0.68 0.651932
Target:  5'- cGAGUGCGCgggcccGCCUgggcaggcgCGGGCCCUGGGa -3'
miRNA:   3'- aUUCGCGCGa-----UGGA---------GCUCGGGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 49308 0.68 0.651932
Target:  5'- gUGAGCGcCGCgcagcCCUCGAG-CCgGAACu -3'
miRNA:   3'- -AUUCGC-GCGau---GGAGCUCgGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 85836 0.68 0.662216
Target:  5'- aGAGCGUGUgguugGCCUCGuagagcGCCUCGcGCa -3'
miRNA:   3'- aUUCGCGCGa----UGGAGCu-----CGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 104282 0.68 0.662216
Target:  5'- -cGGCuGCGCggGCCUCGcAGgCCCGcGCg -3'
miRNA:   3'- auUCG-CGCGa-UGGAGC-UCgGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 105307 0.68 0.662216
Target:  5'- cGAGCGCGggGuCCUCGcacuccGCCCCGGc- -3'
miRNA:   3'- aUUCGCGCgaU-GGAGCu-----CGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 59111 0.68 0.6694
Target:  5'- cAGGCGCGCgcgagcuccccgGCCacCGAcucaggccggcgcGCCCCGGGCg -3'
miRNA:   3'- aUUCGCGCGa-----------UGGa-GCU-------------CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 132717 0.68 0.672475
Target:  5'- -cGGCGCcCUACCUCauugcggcGGCCCCGcACu -3'
miRNA:   3'- auUCGCGcGAUGGAGc-------UCGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 74952 0.68 0.672475
Target:  5'- cGGGCGCGCUcggcGCgCUCGAGgCCgCGcGCc -3'
miRNA:   3'- aUUCGCGCGA----UG-GAGCUCgGG-GCuUG- -5'
23699 3' -57.7 NC_005261.1 + 44306 0.68 0.682701
Target:  5'- aGGGC-CGCUGCCcgCGGGCgCCGcaGACg -3'
miRNA:   3'- aUUCGcGCGAUGGa-GCUCGgGGC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 106723 0.68 0.682701
Target:  5'- gAAGCG-GCccACCUCGugcAGCCCCGGc- -3'
miRNA:   3'- aUUCGCgCGa-UGGAGC---UCGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 109528 0.68 0.682701
Target:  5'- --uGCGCGCccGCCgCGGGCCCCc--- -3'
miRNA:   3'- auuCGCGCGa-UGGaGCUCGGGGcuug -5'
23699 3' -57.7 NC_005261.1 + 118378 0.68 0.682701
Target:  5'- gGGGCGCGCgGCC-CGAggcgcuggcgGCCgCGGGCg -3'
miRNA:   3'- aUUCGCGCGaUGGaGCU----------CGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 57399 0.68 0.690851
Target:  5'- gGAGCGCGCccgugauccgcgGCCggcgccgCGAGCCCaGGAUg -3'
miRNA:   3'- aUUCGCGCGa-----------UGGa------GCUCGGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 29534 0.68 0.692884
Target:  5'- aGAGCGCGaaGCUcgCGGGCCCgGAccuGCa -3'
miRNA:   3'- aUUCGCGCgaUGGa-GCUCGGGgCU---UG- -5'
23699 3' -57.7 NC_005261.1 + 30948 0.68 0.692884
Target:  5'- cGGGgGCGg-GCCUCGAGgCCCGccgcGACg -3'
miRNA:   3'- aUUCgCGCgaUGGAGCUCgGGGC----UUG- -5'
23699 3' -57.7 NC_005261.1 + 77084 0.68 0.692884
Target:  5'- gAGGCGCuggcgcggacGCUGCuCUCGAcgGCCgUGAACa -3'
miRNA:   3'- aUUCGCG----------CGAUG-GAGCU--CGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 126935 0.68 0.692884
Target:  5'- -cAGCaGCGCgGCCagGGGCgCCGGGCg -3'
miRNA:   3'- auUCG-CGCGaUGGagCUCGgGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.