miRNA display CGI


Results 121 - 140 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 4411 0.67 0.733012
Target:  5'- -cGGCGCGCUGCCgggcCaGGCCUCGc-- -3'
miRNA:   3'- auUCGCGCGAUGGa---GcUCGGGGCuug -5'
23699 3' -57.7 NC_005261.1 + 120377 0.67 0.733012
Target:  5'- -cGGCGcCGCgcCCUCGcGCaCCGAGCa -3'
miRNA:   3'- auUCGC-GCGauGGAGCuCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 117212 0.67 0.733012
Target:  5'- -cGGCGCGCccgcUGCCU-GGGCgCCGAGu -3'
miRNA:   3'- auUCGCGCG----AUGGAgCUCGgGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 20118 0.67 0.733012
Target:  5'- aAGGCGCGCggGCC-CGcagcGGCuCCgCGAGCg -3'
miRNA:   3'- aUUCGCGCGa-UGGaGC----UCG-GG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 72652 0.67 0.733012
Target:  5'- --uGgGgGCcGCCUCGGGCCCCcccGGCg -3'
miRNA:   3'- auuCgCgCGaUGGAGCUCGGGGc--UUG- -5'
23699 3' -57.7 NC_005261.1 + 118893 0.67 0.742845
Target:  5'- cGGGCGCGCUggugGCCUgcgucugggucCGGcGCCgCGGGCg -3'
miRNA:   3'- aUUCGCGCGA----UGGA-----------GCU-CGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 20250 0.67 0.742845
Target:  5'- --cGCGCGCU-CCaUGGGCgCCGAGa -3'
miRNA:   3'- auuCGCGCGAuGGaGCUCGgGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 106566 0.67 0.742845
Target:  5'- -cGGCGCGCgccgGCCcCGGGgCCgCCGcGCg -3'
miRNA:   3'- auUCGCGCGa---UGGaGCUC-GG-GGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 100877 0.67 0.742845
Target:  5'- gAAGCGCGCgcagccCCUCGuacgcGGCCUCGccGCg -3'
miRNA:   3'- aUUCGCGCGau----GGAGC-----UCGGGGCu-UG- -5'
23699 3' -57.7 NC_005261.1 + 42158 0.67 0.742845
Target:  5'- --cGCGCGaacGCCggaagCGAGCCgUGGACg -3'
miRNA:   3'- auuCGCGCga-UGGa----GCUCGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 133754 0.67 0.752581
Target:  5'- --cGCGCGCga--UCGAcGCCCCGuGCc -3'
miRNA:   3'- auuCGCGCGauggAGCU-CGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 130659 0.67 0.752581
Target:  5'- --cGaCGCGCUGCUccucggCGAGCCCCu--- -3'
miRNA:   3'- auuC-GCGCGAUGGa-----GCUCGGGGcuug -5'
23699 3' -57.7 NC_005261.1 + 118637 0.67 0.752581
Target:  5'- --cGCG-GCgGCgCUCuGGGCCCCGGGCc -3'
miRNA:   3'- auuCGCgCGaUG-GAG-CUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 117295 0.67 0.752581
Target:  5'- cGAGCcCGC--CCUCGAGCCCagccccggcgCGGGCa -3'
miRNA:   3'- aUUCGcGCGauGGAGCUCGGG----------GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 88770 0.67 0.752581
Target:  5'- --cGCuGCGCU-CCUCG-GCCCUGGc- -3'
miRNA:   3'- auuCG-CGCGAuGGAGCuCGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 78165 0.67 0.752581
Target:  5'- -cGGCGgGCcACCUgagGAGCCCgGGGCc -3'
miRNA:   3'- auUCGCgCGaUGGAg--CUCGGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 51897 0.67 0.752581
Target:  5'- -cGGCGCGCUACaUCG---CCCGGGCg -3'
miRNA:   3'- auUCGCGCGAUGgAGCucgGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 42241 0.67 0.752581
Target:  5'- --cGCGCGCagcGCCUCGAacuGCCCgCGcgaGGCg -3'
miRNA:   3'- auuCGCGCGa--UGGAGCU---CGGG-GC---UUG- -5'
23699 3' -57.7 NC_005261.1 + 31859 0.67 0.752581
Target:  5'- -cGGCGCGU--CUUCGGGCCCgGcGCc -3'
miRNA:   3'- auUCGCGCGauGGAGCUCGGGgCuUG- -5'
23699 3' -57.7 NC_005261.1 + 18393 0.67 0.752581
Target:  5'- aAAGC-CGCUGCggacgCGGGCCUCGGAg -3'
miRNA:   3'- aUUCGcGCGAUGga---GCUCGGGGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.