miRNA display CGI


Results 81 - 100 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 101537 0.67 0.72309
Target:  5'- --cGCGCGCcGCCUCG-GCCgCCa--- -3'
miRNA:   3'- auuCGCGCGaUGGAGCuCGG-GGcuug -5'
23699 3' -57.7 NC_005261.1 + 11236 0.67 0.722093
Target:  5'- cGGGCGCGCUuccuCCUCGAucucgugGUCUCGGucGCu -3'
miRNA:   3'- aUUCGCGCGAu---GGAGCU-------CGGGGCU--UG- -5'
23699 3' -57.7 NC_005261.1 + 106919 0.67 0.713088
Target:  5'- -cGGCGCGCUGCa--GGGCCgCC-AGCg -3'
miRNA:   3'- auUCGCGCGAUGgagCUCGG-GGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 69637 0.67 0.713088
Target:  5'- --cGUGCGCUACCUgCGcGCCCuCGucAACc -3'
miRNA:   3'- auuCGCGCGAUGGA-GCuCGGG-GC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 43141 0.67 0.713088
Target:  5'- --cGCGCGCgcgGCCUgCGcGCCgCCGAc- -3'
miRNA:   3'- auuCGCGCGa--UGGA-GCuCGG-GGCUug -5'
23699 3' -57.7 NC_005261.1 + 16202 0.67 0.713088
Target:  5'- gGGGcCGCGUgaugGCCUCGAGgCUCGGc- -3'
miRNA:   3'- aUUC-GCGCGa---UGGAGCUCgGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 71343 0.68 0.703016
Target:  5'- cGAGCGCGU--CCUCGgugAGCgCCGAGa -3'
miRNA:   3'- aUUCGCGCGauGGAGC---UCGgGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 92475 0.68 0.703016
Target:  5'- aUGAGCG-GC-ACCgCGAGCUCgCGGACg -3'
miRNA:   3'- -AUUCGCgCGaUGGaGCUCGGG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 134713 0.68 0.703016
Target:  5'- -cGGCGCGCccagACCcggcCGGGaCCCGGACu -3'
miRNA:   3'- auUCGCGCGa---UGGa---GCUCgGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 5147 0.68 0.692884
Target:  5'- --cGCGCGCcucgGCCcggCGGGCCgcgUCGAGCa -3'
miRNA:   3'- auuCGCGCGa---UGGa--GCUCGG---GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 77084 0.68 0.692884
Target:  5'- gAGGCGCuggcgcggacGCUGCuCUCGAcgGCCgUGAACa -3'
miRNA:   3'- aUUCGCG----------CGAUG-GAGCU--CGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 30948 0.68 0.692884
Target:  5'- cGGGgGCGg-GCCUCGAGgCCCGccgcGACg -3'
miRNA:   3'- aUUCgCGCgaUGGAGCUCgGGGC----UUG- -5'
23699 3' -57.7 NC_005261.1 + 29534 0.68 0.692884
Target:  5'- aGAGCGCGaaGCUcgCGGGCCCgGAccuGCa -3'
miRNA:   3'- aUUCGCGCgaUGGa-GCUCGGGgCU---UG- -5'
23699 3' -57.7 NC_005261.1 + 126935 0.68 0.692884
Target:  5'- -cAGCaGCGCgGCCagGGGCgCCGGGCg -3'
miRNA:   3'- auUCG-CGCGaUGGagCUCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 13044 0.68 0.692884
Target:  5'- aGGGCGCGggGCCgcgCGcGCCCCugccGGGCg -3'
miRNA:   3'- aUUCGCGCgaUGGa--GCuCGGGG----CUUG- -5'
23699 3' -57.7 NC_005261.1 + 57399 0.68 0.690851
Target:  5'- gGAGCGCGCccgugauccgcgGCCggcgccgCGAGCCCaGGAUg -3'
miRNA:   3'- aUUCGCGCGa-----------UGGa------GCUCGGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 118378 0.68 0.682701
Target:  5'- gGGGCGCGCgGCC-CGAggcgcuggcgGCCgCGGGCg -3'
miRNA:   3'- aUUCGCGCGaUGGaGCU----------CGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 106723 0.68 0.682701
Target:  5'- gAAGCG-GCccACCUCGugcAGCCCCGGc- -3'
miRNA:   3'- aUUCGCgCGa-UGGAGC---UCGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 44306 0.68 0.682701
Target:  5'- aGGGC-CGCUGCCcgCGGGCgCCGcaGACg -3'
miRNA:   3'- aUUCGcGCGAUGGa-GCUCGgGGC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 109528 0.68 0.682701
Target:  5'- --uGCGCGCccGCCgCGGGCCCCc--- -3'
miRNA:   3'- auuCGCGCGa-UGGaGCUCGGGGcuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.