Results 101 - 120 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 132717 | 0.68 | 0.672475 |
Target: 5'- -cGGCGCcCUACCUCauugcggcGGCCCCGcACu -3' miRNA: 3'- auUCGCGcGAUGGAGc-------UCGGGGCuUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 74952 | 0.68 | 0.672475 |
Target: 5'- cGGGCGCGCUcggcGCgCUCGAGgCCgCGcGCc -3' miRNA: 3'- aUUCGCGCGA----UG-GAGCUCgGG-GCuUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 59111 | 0.68 | 0.6694 |
Target: 5'- cAGGCGCGCgcgagcuccccgGCCacCGAcucaggccggcgcGCCCCGGGCg -3' miRNA: 3'- aUUCGCGCGa-----------UGGa-GCU-------------CGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 85836 | 0.68 | 0.662216 |
Target: 5'- aGAGCGUGUgguugGCCUCGuagagcGCCUCGcGCa -3' miRNA: 3'- aUUCGCGCGa----UGGAGCu-----CGGGGCuUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 104282 | 0.68 | 0.662216 |
Target: 5'- -cGGCuGCGCggGCCUCGcAGgCCCGcGCg -3' miRNA: 3'- auUCG-CGCGa-UGGAGC-UCgGGGCuUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 105307 | 0.68 | 0.662216 |
Target: 5'- cGAGCGCGggGuCCUCGcacuccGCCCCGGc- -3' miRNA: 3'- aUUCGCGCgaU-GGAGCu-----CGGGGCUug -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 107628 | 0.68 | 0.651932 |
Target: 5'- --cGUGCGCgggaaCUCGAGCgCCCGcGCu -3' miRNA: 3'- auuCGCGCGaug--GAGCUCG-GGGCuUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 132447 | 0.68 | 0.651932 |
Target: 5'- aGAGCGCGUgccCCUCGGccGCCCUccGCg -3' miRNA: 3'- aUUCGCGCGau-GGAGCU--CGGGGcuUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 130470 | 0.68 | 0.651932 |
Target: 5'- cGAGCG-GCUcgcggcguGCCUCGgcggcgagGGCCCCGAcgACg -3' miRNA: 3'- aUUCGCgCGA--------UGGAGC--------UCGGGGCU--UG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 49308 | 0.68 | 0.651932 |
Target: 5'- gUGAGCGcCGCgcagcCCUCGAG-CCgGAACu -3' miRNA: 3'- -AUUCGC-GCGau---GGAGCUCgGGgCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 23483 | 0.68 | 0.651932 |
Target: 5'- cGAGUGCGCgggcccGCCUgggcaggcgCGGGCCCUGGGa -3' miRNA: 3'- aUUCGCGCGa-----UGGA---------GCUCGGGGCUUg -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 68180 | 0.69 | 0.641632 |
Target: 5'- --cGCGCGC-GCCgCGGGCCCCc--- -3' miRNA: 3'- auuCGCGCGaUGGaGCUCGGGGcuug -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 86196 | 0.69 | 0.641632 |
Target: 5'- cGAGCGgGCUccGCgUCGGcGCgCCGAACc -3' miRNA: 3'- aUUCGCgCGA--UGgAGCU-CGgGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 4914 | 0.69 | 0.631325 |
Target: 5'- -cGGCG-GCUGCCUCcgccgcGGCCgCGAGCg -3' miRNA: 3'- auUCGCgCGAUGGAGc-----UCGGgGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 92938 | 0.69 | 0.631325 |
Target: 5'- gGAGCa-GCUGCC-CGGcGUCCCGGACa -3' miRNA: 3'- aUUCGcgCGAUGGaGCU-CGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 19764 | 0.69 | 0.631325 |
Target: 5'- cGGGCGCGg-GCCcCGucGCCUCGAACa -3' miRNA: 3'- aUUCGCGCgaUGGaGCu-CGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 55426 | 0.69 | 0.631325 |
Target: 5'- -cGGCugGCGCcACCgCGAGCCCucCGAGCg -3' miRNA: 3'- auUCG--CGCGaUGGaGCUCGGG--GCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 38523 | 0.69 | 0.631325 |
Target: 5'- --cGCGCGCUGgCUgCGcGCgCCGGGCa -3' miRNA: 3'- auuCGCGCGAUgGA-GCuCGgGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 103279 | 0.69 | 0.621018 |
Target: 5'- -cAGCGCGCcgggUGCCgcgCGcAGCCCCGcgaAGCc -3' miRNA: 3'- auUCGCGCG----AUGGa--GC-UCGGGGC---UUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 61405 | 0.69 | 0.621018 |
Target: 5'- cGGGCGCGUggugGCCUCGcaggaccuGGCCUCGcuGACc -3' miRNA: 3'- aUUCGCGCGa---UGGAGC--------UCGGGGC--UUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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