miRNA display CGI


Results 61 - 80 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 44306 0.68 0.682701
Target:  5'- aGGGC-CGCUGCCcgCGGGCgCCGcaGACg -3'
miRNA:   3'- aUUCGcGCGAUGGa-GCUCGgGGC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 44468 0.71 0.51961
Target:  5'- gGAGCugcuGCGCUGCUUCaAGCuggCCCGGACg -3'
miRNA:   3'- aUUCG----CGCGAUGGAGcUCG---GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 44729 0.78 0.212594
Target:  5'- -cAGgGCGCUGCagcUGGGCCCCGAGCu -3'
miRNA:   3'- auUCgCGCGAUGga-GCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 46069 0.71 0.529515
Target:  5'- gAAGgGCGCcGCCUCGuGGCCggacaCGAGCa -3'
miRNA:   3'- aUUCgCGCGaUGGAGC-UCGGg----GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 46578 0.78 0.207377
Target:  5'- cGAGCGCG--GCCUCGcgcgacacGGCCCCGGGCa -3'
miRNA:   3'- aUUCGCGCgaUGGAGC--------UCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 46776 0.71 0.490357
Target:  5'- gGAGCGag--GgCUUGAGCCCCGGGCg -3'
miRNA:   3'- aUUCGCgcgaUgGAGCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 46995 0.66 0.799456
Target:  5'- -cAGCGCGCgccgcGCCgccgCGAugcggcgguccaGCCCCGcGACg -3'
miRNA:   3'- auUCGCGCGa----UGGa---GCU------------CGGGGC-UUG- -5'
23699 3' -57.7 NC_005261.1 + 48287 0.67 0.762208
Target:  5'- cAAGCGcCGCUuccagcgagGCCUCGgggggcgcgucGGgCCCGGGCu -3'
miRNA:   3'- aUUCGC-GCGA---------UGGAGC-----------UCgGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 48547 0.74 0.365755
Target:  5'- --uGCGUGCUcuucuGCagcCGGGCCCCGAACa -3'
miRNA:   3'- auuCGCGCGA-----UGga-GCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 48665 0.66 0.808407
Target:  5'- aGAGcCGCGCggcaacggcgACUaCGGGCCCgCGGGCc -3'
miRNA:   3'- aUUC-GCGCGa---------UGGaGCUCGGG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 49101 0.72 0.443409
Target:  5'- cUGAGCGCGCgcagcagcuCCUCGAGCgCggCGGGCg -3'
miRNA:   3'- -AUUCGCGCGau-------GGAGCUCGgG--GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 49308 0.68 0.651932
Target:  5'- gUGAGCGcCGCgcagcCCUCGAG-CCgGAACu -3'
miRNA:   3'- -AUUCGC-GCGau---GGAGCUCgGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 49868 0.72 0.452599
Target:  5'- gAAGCGCGCgg---CGAGCUCCGAGa -3'
miRNA:   3'- aUUCGCGCGauggaGCUCGGGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 51225 0.7 0.559619
Target:  5'- cUGGGCGCGCUagccGCCUgGAcGCUCCaGGCg -3'
miRNA:   3'- -AUUCGCGCGA----UGGAgCU-CGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 51415 0.77 0.240396
Target:  5'- --cGCGCGCccaccGCCUgcUGGGCCCCGGGCg -3'
miRNA:   3'- auuCGCGCGa----UGGA--GCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 51897 0.67 0.752581
Target:  5'- -cGGCGCGCUACaUCG---CCCGGGCg -3'
miRNA:   3'- auUCGCGCGAUGgAGCucgGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 52667 0.66 0.808407
Target:  5'- --cGCGCGC-ACUUCGAgcggGCCCUGcuCg -3'
miRNA:   3'- auuCGCGCGaUGGAGCU----CGGGGCuuG- -5'
23699 3' -57.7 NC_005261.1 + 53879 0.66 0.799456
Target:  5'- --cGCGCGCUGUCgagucgaagCGGGCCCgcuucgCGAGCg -3'
miRNA:   3'- auuCGCGCGAUGGa--------GCUCGGG------GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 55426 0.69 0.631325
Target:  5'- -cGGCugGCGCcACCgCGAGCCCucCGAGCg -3'
miRNA:   3'- auUCG--CGCGaUGGaGCUCGGG--GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 55740 0.73 0.399098
Target:  5'- cGGGCGUGCUGCCggaCG-GCCUCGAcGCg -3'
miRNA:   3'- aUUCGCGCGAUGGa--GCuCGGGGCU-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.