miRNA display CGI


Results 81 - 100 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 56612 0.7 0.59018
Target:  5'- cAAGCGCGCgcGCgUgGAGCCCCccAGCg -3'
miRNA:   3'- aUUCGCGCGa-UGgAgCUCGGGGc-UUG- -5'
23699 3' -57.7 NC_005261.1 + 57399 0.68 0.690851
Target:  5'- gGAGCGCGCccgugauccgcgGCCggcgccgCGAGCCCaGGAUg -3'
miRNA:   3'- aUUCGCGCGa-----------UGGa------GCUCGGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 59111 0.68 0.6694
Target:  5'- cAGGCGCGCgcgagcuccccgGCCacCGAcucaggccggcgcGCCCCGGGCg -3'
miRNA:   3'- aUUCGCGCGa-----------UGGa-GCU-------------CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 60404 0.67 0.762208
Target:  5'- -uGGCGCcggGCcgGCC-CGGGCCCgGGGCc -3'
miRNA:   3'- auUCGCG---CGa-UGGaGCUCGGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 61405 0.69 0.621018
Target:  5'- cGGGCGCGUggugGCCUCGcaggaccuGGCCUCGcuGACc -3'
miRNA:   3'- aUUCGCGCGa---UGGAGC--------UCGGGGC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 61948 0.69 0.608662
Target:  5'- gGGGCGCGCgccgACCgcgucccccagcCGGGUCgCCGAGCu -3'
miRNA:   3'- aUUCGCGCGa---UGGa-----------GCUCGG-GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 62308 0.66 0.790352
Target:  5'- cGGGCGCGCggcgGCCccgCGGuCCCCcAGCg -3'
miRNA:   3'- aUUCGCGCGa---UGGa--GCUcGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 66015 0.66 0.794012
Target:  5'- --cGCGCGCcACCgccggcgcgucguagUCGgcggccacggccAGCCCCGGGCc -3'
miRNA:   3'- auuCGCGCGaUGG---------------AGC------------UCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 68180 0.69 0.641632
Target:  5'- --cGCGCGC-GCCgCGGGCCCCc--- -3'
miRNA:   3'- auuCGCGCGaUGGaGCUCGGGGcuug -5'
23699 3' -57.7 NC_005261.1 + 68572 0.7 0.59018
Target:  5'- uUGAGCGCGUcGCCgccgaggCGGGCCgCGGGa -3'
miRNA:   3'- -AUUCGCGCGaUGGa------GCUCGGgGCUUg -5'
23699 3' -57.7 NC_005261.1 + 68973 0.66 0.790352
Target:  5'- --uGCGCGCcACCgcggcccuuuUCGGGCCgCgCGGGCg -3'
miRNA:   3'- auuCGCGCGaUGG----------AGCUCGG-G-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 69371 0.74 0.365755
Target:  5'- --cGCGCGCUggACCUCGAgaugaccgccGUCCUGAGCc -3'
miRNA:   3'- auuCGCGCGA--UGGAGCU----------CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 69637 0.67 0.713088
Target:  5'- --cGUGCGCUACCUgCGcGCCCuCGucAACc -3'
miRNA:   3'- auuCGCGCGAUGGA-GCuCGGG-GC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 71225 0.66 0.775488
Target:  5'- --cGCGCGCgcacgcgGCCcucggcggcgcagcCGAGCCCCGcGCc -3'
miRNA:   3'- auuCGCGCGa------UGGa-------------GCUCGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 71343 0.68 0.703016
Target:  5'- cGAGCGCGU--CCUCGgugAGCgCCGAGa -3'
miRNA:   3'- aUUCGCGCGauGGAGC---UCGgGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 72652 0.67 0.733012
Target:  5'- --uGgGgGCcGCCUCGGGCCCCcccGGCg -3'
miRNA:   3'- auuCgCgCGaUGGAGCUCGGGGc--UUG- -5'
23699 3' -57.7 NC_005261.1 + 74091 0.71 0.51961
Target:  5'- --uGUGCGCgACCUCGcccCCCCGGGCc -3'
miRNA:   3'- auuCGCGCGaUGGAGCuc-GGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 74789 0.66 0.808407
Target:  5'- --cGCGCGCauccgGCCuaUCGAGgCCCGcguGGCg -3'
miRNA:   3'- auuCGCGCGa----UGG--AGCUCgGGGC---UUG- -5'
23699 3' -57.7 NC_005261.1 + 74952 0.68 0.672475
Target:  5'- cGGGCGCGCUcggcGCgCUCGAGgCCgCGcGCc -3'
miRNA:   3'- aUUCGCGCGA----UG-GAGCUCgGG-GCuUG- -5'
23699 3' -57.7 NC_005261.1 + 75847 0.74 0.349819
Target:  5'- gGGGCGCGCggcGCCgacggCG-GCCCCGAcgGCg -3'
miRNA:   3'- aUUCGCGCGa--UGGa----GCuCGGGGCU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.