miRNA display CGI


Results 101 - 120 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 76076 0.66 0.808407
Target:  5'- aGGGCGgGCUgcugcGCCUCGuGGCgCUgGAGCu -3'
miRNA:   3'- aUUCGCgCGA-----UGGAGC-UCG-GGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 76475 0.73 0.399098
Target:  5'- -cGGCGCGCgcgcggACCcCGAGCCCUcGGCg -3'
miRNA:   3'- auUCGCGCGa-----UGGaGCUCGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 76605 0.7 0.539488
Target:  5'- --cGCGCGCUGCCgccCGccGCCCCGcuGCc -3'
miRNA:   3'- auuCGCGCGAUGGa--GCu-CGGGGCu-UG- -5'
23699 3' -57.7 NC_005261.1 + 77084 0.68 0.692884
Target:  5'- gAGGCGCuggcgcggacGCUGCuCUCGAcgGCCgUGAACa -3'
miRNA:   3'- aUUCGCG----------CGAUG-GAGCU--CGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 78165 0.67 0.752581
Target:  5'- -cGGCGgGCcACCUgagGAGCCCgGGGCc -3'
miRNA:   3'- auUCGCgCGaUGGAg--CUCGGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 80138 0.66 0.781103
Target:  5'- -cGGCGcCGCUACCaccggcggCGAacaGCCCCucGAGCg -3'
miRNA:   3'- auUCGC-GCGAUGGa-------GCU---CGGGG--CUUG- -5'
23699 3' -57.7 NC_005261.1 + 80869 0.69 0.600438
Target:  5'- cAGGCGCGCUcaGCCgcgCGGGCUUC-AGCg -3'
miRNA:   3'- aUUCGCGCGA--UGGa--GCUCGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 82000 0.69 0.600438
Target:  5'- --uGCGCGCUGCCgucgaaGAGCggCCCGuuGACg -3'
miRNA:   3'- auuCGCGCGAUGGag----CUCG--GGGC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 82662 0.66 0.781103
Target:  5'- --cGCGCGgaugagcGCCUCGAGCCgcucgUCGGGCg -3'
miRNA:   3'- auuCGCGCga-----UGGAGCUCGG-----GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 82992 0.67 0.762208
Target:  5'- gAGGCG-GCcGCCUCGcGCaCCGAGCc -3'
miRNA:   3'- aUUCGCgCGaUGGAGCuCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 83389 0.67 0.733012
Target:  5'- cGAGCGCG--GCCUCG-GCCgaggCGAGCa -3'
miRNA:   3'- aUUCGCGCgaUGGAGCuCGGg---GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 83757 0.73 0.399098
Target:  5'- -cGGCGCGCcacgGCCgggUCGcAGCgCCCGAGCa -3'
miRNA:   3'- auUCGCGCGa---UGG---AGC-UCG-GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 83894 0.71 0.490357
Target:  5'- cUGAGCGCGggGCCgcCGGGCUCgGGACc -3'
miRNA:   3'- -AUUCGCGCgaUGGa-GCUCGGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 84375 0.72 0.461893
Target:  5'- --cGCGgGCUcgGCCUCGGccgccGCCUCGAGCu -3'
miRNA:   3'- auuCGCgCGA--UGGAGCU-----CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 85019 0.66 0.799456
Target:  5'- gGGGuCGCGCgGCCgcCGcGCCCCGGccACg -3'
miRNA:   3'- aUUC-GCGCGaUGGa-GCuCGGGGCU--UG- -5'
23699 3' -57.7 NC_005261.1 + 85836 0.68 0.662216
Target:  5'- aGAGCGUGUgguugGCCUCGuagagcGCCUCGcGCa -3'
miRNA:   3'- aUUCGCGCGa----UGGAGCu-----CGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 86093 0.66 0.771719
Target:  5'- --cGCGCGU--UCUCGucGGCgCCCGGGCg -3'
miRNA:   3'- auuCGCGCGauGGAGC--UCG-GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 86196 0.69 0.641632
Target:  5'- cGAGCGgGCUccGCgUCGGcGCgCCGAACc -3'
miRNA:   3'- aUUCGCgCGA--UGgAGCU-CGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 86873 0.66 0.808407
Target:  5'- cGGGCGCgGCgGCCUUGGccgcGCCCUGGuccGCg -3'
miRNA:   3'- aUUCGCG-CGaUGGAGCU----CGGGGCU---UG- -5'
23699 3' -57.7 NC_005261.1 + 88492 0.74 0.365755
Target:  5'- gGAGCGCGCcGCgCUCGAcccgcGCUUCGAGCg -3'
miRNA:   3'- aUUCGCGCGaUG-GAGCU-----CGGGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.