miRNA display CGI


Results 121 - 140 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 88770 0.67 0.752581
Target:  5'- --cGCuGCGCU-CCUCG-GCCCUGGc- -3'
miRNA:   3'- auuCG-CGCGAuGGAGCuCGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 90800 0.67 0.762208
Target:  5'- --cGCGCGCUACCgCGuGCgCUGGu- -3'
miRNA:   3'- auuCGCGCGAUGGaGCuCGgGGCUug -5'
23699 3' -57.7 NC_005261.1 + 92161 0.71 0.51961
Target:  5'- cGAGCGCGC-GCUcggUgGAGCCgCCGGGCc -3'
miRNA:   3'- aUUCGCGCGaUGG---AgCUCGG-GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 92475 0.68 0.703016
Target:  5'- aUGAGCG-GC-ACCgCGAGCUCgCGGACg -3'
miRNA:   3'- -AUUCGCgCGaUGGaGCUCGGG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 92610 0.76 0.277689
Target:  5'- -cGGCGCG-UGCCg-GGGCCCCGGGCg -3'
miRNA:   3'- auUCGCGCgAUGGagCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 92938 0.69 0.631325
Target:  5'- gGAGCa-GCUGCC-CGGcGUCCCGGACa -3'
miRNA:   3'- aUUCGcgCGAUGGaGCU-CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 93590 0.74 0.342038
Target:  5'- --cGCGCGCUcggcgACCUCGccgucGCCCCGggUc -3'
miRNA:   3'- auuCGCGCGA-----UGGAGCu----CGGGGCuuG- -5'
23699 3' -57.7 NC_005261.1 + 93812 0.67 0.733012
Target:  5'- --cGCGCGCcGCCgccaccgcCGcAGCCgCCGGGCg -3'
miRNA:   3'- auuCGCGCGaUGGa-------GC-UCGG-GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 94609 0.71 0.51961
Target:  5'- cGAGCGCGCgcCCUCGccGCCgCCGGc- -3'
miRNA:   3'- aUUCGCGCGauGGAGCu-CGG-GGCUug -5'
23699 3' -57.7 NC_005261.1 + 94717 0.67 0.72309
Target:  5'- gGAGCGcCGCUACCUCcgGGGCggggacaCCGAc- -3'
miRNA:   3'- aUUCGC-GCGAUGGAG--CUCGg------GGCUug -5'
23699 3' -57.7 NC_005261.1 + 94844 0.72 0.452599
Target:  5'- -cGGCGCGCcugGCCUCGGcGCucgcgcacggCCCGGGCg -3'
miRNA:   3'- auUCGCGCGa--UGGAGCU-CG----------GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 96288 0.66 0.799456
Target:  5'- -uGGCGCgGCUucgGCCUCG-GCCgCGcGCa -3'
miRNA:   3'- auUCGCG-CGA---UGGAGCuCGGgGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 97002 0.7 0.579953
Target:  5'- cUAAGCGCGCcAUUgggCGGGCCgUCGGGCg -3'
miRNA:   3'- -AUUCGCGCGaUGGa--GCUCGG-GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 97764 0.72 0.4694
Target:  5'- -cGGCgGCGCgGCCggcaucgacuccCGAGCCCCGGGCc -3'
miRNA:   3'- auUCG-CGCGaUGGa-----------GCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 97863 0.72 0.4694
Target:  5'- -cGGCaGCGCgGCCggcaucgauuucCGAGCCCCGGGCc -3'
miRNA:   3'- auUCG-CGCGaUGGa-----------GCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 99232 0.66 0.781103
Target:  5'- cAGGCGCGUcgGCgUCGcGCCcgCCGGGCc -3'
miRNA:   3'- aUUCGCGCGa-UGgAGCuCGG--GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 99555 0.66 0.771719
Target:  5'- -cGGCGCGCcaggaagGCgUCGuAGCUCUGGGCc -3'
miRNA:   3'- auUCGCGCGa------UGgAGC-UCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 99680 0.67 0.759332
Target:  5'- -cAGCGCGCUGCC-CGggaugaggcgcgccAGCUCCGccACg -3'
miRNA:   3'- auUCGCGCGAUGGaGC--------------UCGGGGCu-UG- -5'
23699 3' -57.7 NC_005261.1 + 100567 0.66 0.808407
Target:  5'- -cAGCGUGCacaccgccGCCUCGucGCCCagGAGCg -3'
miRNA:   3'- auUCGCGCGa-------UGGAGCu-CGGGg-CUUG- -5'
23699 3' -57.7 NC_005261.1 + 100704 0.71 0.509778
Target:  5'- -cGGCGCGCgccGCC-CGAGCCgCGGccGCg -3'
miRNA:   3'- auUCGCGCGa--UGGaGCUCGGgGCU--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.