miRNA display CGI


Results 141 - 160 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 100877 0.67 0.742845
Target:  5'- gAAGCGCGCgcagccCCUCGuacgcGGCCUCGccGCg -3'
miRNA:   3'- aUUCGCGCGau----GGAGC-----UCGGGGCu-UG- -5'
23699 3' -57.7 NC_005261.1 + 101537 0.67 0.72309
Target:  5'- --cGCGCGCcGCCUCG-GCCgCCa--- -3'
miRNA:   3'- auuCGCGCGaUGGAGCuCGG-GGcuug -5'
23699 3' -57.7 NC_005261.1 + 101900 0.71 0.529515
Target:  5'- --cGCGCGCUccuCCUCGAaagccgcguGCCCCcGGCg -3'
miRNA:   3'- auuCGCGCGAu--GGAGCU---------CGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 102255 0.71 0.529515
Target:  5'- --uGCGCGCUcGCCUCcAGCgCCCGGu- -3'
miRNA:   3'- auuCGCGCGA-UGGAGcUCG-GGGCUug -5'
23699 3' -57.7 NC_005261.1 + 102445 0.7 0.558607
Target:  5'- -cGGCGCGCcgcccgGCCUCGgcgcgcaGGCgCCGGACc -3'
miRNA:   3'- auUCGCGCGa-----UGGAGC-------UCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 102487 0.66 0.781103
Target:  5'- -cGGCGCGCcGCCgCGccAGCgCCUGGGCc -3'
miRNA:   3'- auUCGCGCGaUGGaGC--UCG-GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 102772 0.78 0.192384
Target:  5'- cGAGCGCGCccgagGCCUCGccccGGCCgCGAGCg -3'
miRNA:   3'- aUUCGCGCGa----UGGAGC----UCGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 103279 0.69 0.621018
Target:  5'- -cAGCGCGCcgggUGCCgcgCGcAGCCCCGcgaAGCc -3'
miRNA:   3'- auUCGCGCG----AUGGa--GC-UCGGGGC---UUG- -5'
23699 3' -57.7 NC_005261.1 + 103437 0.67 0.72309
Target:  5'- --cGCGCGCgcgcGCCUCGcggucGGCCgCCGcGCc -3'
miRNA:   3'- auuCGCGCGa---UGGAGC-----UCGG-GGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 104282 0.68 0.662216
Target:  5'- -cGGCuGCGCggGCCUCGcAGgCCCGcGCg -3'
miRNA:   3'- auUCG-CGCGa-UGGAGC-UCgGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 105140 0.66 0.808407
Target:  5'- -cGGCGCGCgcagguCCUCGcGGCUCgaGGGCg -3'
miRNA:   3'- auUCGCGCGau----GGAGC-UCGGGg-CUUG- -5'
23699 3' -57.7 NC_005261.1 + 105307 0.68 0.662216
Target:  5'- cGAGCGCGggGuCCUCGcacuccGCCCCGGc- -3'
miRNA:   3'- aUUCGCGCgaU-GGAGCu-----CGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 105485 0.75 0.319452
Target:  5'- gGGGCGCGCggGCCcCGAGCCCgcCGAGa -3'
miRNA:   3'- aUUCGCGCGa-UGGaGCUCGGG--GCUUg -5'
23699 3' -57.7 NC_005261.1 + 105948 0.7 0.579953
Target:  5'- cGAGCGCGCcgucgaugGCCUCGGcGCCCaGcGCg -3'
miRNA:   3'- aUUCGCGCGa-------UGGAGCU-CGGGgCuUG- -5'
23699 3' -57.7 NC_005261.1 + 106476 0.71 0.480775
Target:  5'- aGAGCGCcggGCUccCCUCGucGCCCUGGACu -3'
miRNA:   3'- aUUCGCG---CGAu-GGAGCu-CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 106566 0.67 0.742845
Target:  5'- -cGGCGCGCgccgGCCcCGGGgCCgCCGcGCg -3'
miRNA:   3'- auUCGCGCGa---UGGaGCUC-GG-GGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 106723 0.68 0.682701
Target:  5'- gAAGCG-GCccACCUCGugcAGCCCCGGc- -3'
miRNA:   3'- aUUCGCgCGa-UGGAGC---UCGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 106919 0.67 0.713088
Target:  5'- -cGGCGCGCUGCa--GGGCCgCC-AGCg -3'
miRNA:   3'- auUCGCGCGAUGgagCUCGG-GGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 106960 0.72 0.461893
Target:  5'- cGGGCGCGCUccGCCUCGGcgcgcGCgCCGcGCa -3'
miRNA:   3'- aUUCGCGCGA--UGGAGCU-----CGgGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 107628 0.68 0.651932
Target:  5'- --cGUGCGCgggaaCUCGAGCgCCCGcGCu -3'
miRNA:   3'- auuCGCGCGaug--GAGCUCG-GGGCuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.