miRNA display CGI


Results 61 - 80 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 94844 0.72 0.452599
Target:  5'- -cGGCGCGCcugGCCUCGGcGCucgcgcacggCCCGGGCg -3'
miRNA:   3'- auUCGCGCGa--UGGAGCU-CG----------GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 94717 0.67 0.72309
Target:  5'- gGAGCGcCGCUACCUCcgGGGCggggacaCCGAc- -3'
miRNA:   3'- aUUCGC-GCGAUGGAG--CUCGg------GGCUug -5'
23699 3' -57.7 NC_005261.1 + 94609 0.71 0.51961
Target:  5'- cGAGCGCGCgcCCUCGccGCCgCCGGc- -3'
miRNA:   3'- aUUCGCGCGauGGAGCu-CGG-GGCUug -5'
23699 3' -57.7 NC_005261.1 + 93812 0.67 0.733012
Target:  5'- --cGCGCGCcGCCgccaccgcCGcAGCCgCCGGGCg -3'
miRNA:   3'- auuCGCGCGaUGGa-------GC-UCGG-GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 93590 0.74 0.342038
Target:  5'- --cGCGCGCUcggcgACCUCGccgucGCCCCGggUc -3'
miRNA:   3'- auuCGCGCGA-----UGGAGCu----CGGGGCuuG- -5'
23699 3' -57.7 NC_005261.1 + 92938 0.69 0.631325
Target:  5'- gGAGCa-GCUGCC-CGGcGUCCCGGACa -3'
miRNA:   3'- aUUCGcgCGAUGGaGCU-CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 92610 0.76 0.277689
Target:  5'- -cGGCGCG-UGCCg-GGGCCCCGGGCg -3'
miRNA:   3'- auUCGCGCgAUGGagCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 92475 0.68 0.703016
Target:  5'- aUGAGCG-GC-ACCgCGAGCUCgCGGACg -3'
miRNA:   3'- -AUUCGCgCGaUGGaGCUCGGG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 92161 0.71 0.51961
Target:  5'- cGAGCGCGC-GCUcggUgGAGCCgCCGGGCc -3'
miRNA:   3'- aUUCGCGCGaUGG---AgCUCGG-GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 90800 0.67 0.762208
Target:  5'- --cGCGCGCUACCgCGuGCgCUGGu- -3'
miRNA:   3'- auuCGCGCGAUGGaGCuCGgGGCUug -5'
23699 3' -57.7 NC_005261.1 + 88770 0.67 0.752581
Target:  5'- --cGCuGCGCU-CCUCG-GCCCUGGc- -3'
miRNA:   3'- auuCG-CGCGAuGGAGCuCGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 88492 0.74 0.365755
Target:  5'- gGAGCGCGCcGCgCUCGAcccgcGCUUCGAGCg -3'
miRNA:   3'- aUUCGCGCGaUG-GAGCU-----CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 86873 0.66 0.808407
Target:  5'- cGGGCGCgGCgGCCUUGGccgcGCCCUGGuccGCg -3'
miRNA:   3'- aUUCGCG-CGaUGGAGCU----CGGGGCU---UG- -5'
23699 3' -57.7 NC_005261.1 + 86196 0.69 0.641632
Target:  5'- cGAGCGgGCUccGCgUCGGcGCgCCGAACc -3'
miRNA:   3'- aUUCGCgCGA--UGgAGCU-CGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 86093 0.66 0.771719
Target:  5'- --cGCGCGU--UCUCGucGGCgCCCGGGCg -3'
miRNA:   3'- auuCGCGCGauGGAGC--UCG-GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 85836 0.68 0.662216
Target:  5'- aGAGCGUGUgguugGCCUCGuagagcGCCUCGcGCa -3'
miRNA:   3'- aUUCGCGCGa----UGGAGCu-----CGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 85019 0.66 0.799456
Target:  5'- gGGGuCGCGCgGCCgcCGcGCCCCGGccACg -3'
miRNA:   3'- aUUC-GCGCGaUGGa-GCuCGGGGCU--UG- -5'
23699 3' -57.7 NC_005261.1 + 84375 0.72 0.461893
Target:  5'- --cGCGgGCUcgGCCUCGGccgccGCCUCGAGCu -3'
miRNA:   3'- auuCGCgCGA--UGGAGCU-----CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 83894 0.71 0.490357
Target:  5'- cUGAGCGCGggGCCgcCGGGCUCgGGACc -3'
miRNA:   3'- -AUUCGCGCgaUGGa-GCUCGGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 83757 0.73 0.399098
Target:  5'- -cGGCGCGCcacgGCCgggUCGcAGCgCCCGAGCa -3'
miRNA:   3'- auUCGCGCGa---UGG---AGC-UCG-GGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.