miRNA display CGI


Results 81 - 100 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 83389 0.67 0.733012
Target:  5'- cGAGCGCG--GCCUCG-GCCgaggCGAGCa -3'
miRNA:   3'- aUUCGCGCgaUGGAGCuCGGg---GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 82992 0.67 0.762208
Target:  5'- gAGGCG-GCcGCCUCGcGCaCCGAGCc -3'
miRNA:   3'- aUUCGCgCGaUGGAGCuCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 82662 0.66 0.781103
Target:  5'- --cGCGCGgaugagcGCCUCGAGCCgcucgUCGGGCg -3'
miRNA:   3'- auuCGCGCga-----UGGAGCUCGG-----GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 82000 0.69 0.600438
Target:  5'- --uGCGCGCUGCCgucgaaGAGCggCCCGuuGACg -3'
miRNA:   3'- auuCGCGCGAUGGag----CUCG--GGGC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 80869 0.69 0.600438
Target:  5'- cAGGCGCGCUcaGCCgcgCGGGCUUC-AGCg -3'
miRNA:   3'- aUUCGCGCGA--UGGa--GCUCGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 80138 0.66 0.781103
Target:  5'- -cGGCGcCGCUACCaccggcggCGAacaGCCCCucGAGCg -3'
miRNA:   3'- auUCGC-GCGAUGGa-------GCU---CGGGG--CUUG- -5'
23699 3' -57.7 NC_005261.1 + 78165 0.67 0.752581
Target:  5'- -cGGCGgGCcACCUgagGAGCCCgGGGCc -3'
miRNA:   3'- auUCGCgCGaUGGAg--CUCGGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 77084 0.68 0.692884
Target:  5'- gAGGCGCuggcgcggacGCUGCuCUCGAcgGCCgUGAACa -3'
miRNA:   3'- aUUCGCG----------CGAUG-GAGCU--CGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 76605 0.7 0.539488
Target:  5'- --cGCGCGCUGCCgccCGccGCCCCGcuGCc -3'
miRNA:   3'- auuCGCGCGAUGGa--GCu-CGGGGCu-UG- -5'
23699 3' -57.7 NC_005261.1 + 76475 0.73 0.399098
Target:  5'- -cGGCGCGCgcgcggACCcCGAGCCCUcGGCg -3'
miRNA:   3'- auUCGCGCGa-----UGGaGCUCGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 76076 0.66 0.808407
Target:  5'- aGGGCGgGCUgcugcGCCUCGuGGCgCUgGAGCu -3'
miRNA:   3'- aUUCGCgCGA-----UGGAGC-UCG-GGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 75847 0.74 0.349819
Target:  5'- gGGGCGCGCggcGCCgacggCG-GCCCCGAcgGCg -3'
miRNA:   3'- aUUCGCGCGa--UGGa----GCuCGGGGCU--UG- -5'
23699 3' -57.7 NC_005261.1 + 74952 0.68 0.672475
Target:  5'- cGGGCGCGCUcggcGCgCUCGAGgCCgCGcGCc -3'
miRNA:   3'- aUUCGCGCGA----UG-GAGCUCgGG-GCuUG- -5'
23699 3' -57.7 NC_005261.1 + 74789 0.66 0.808407
Target:  5'- --cGCGCGCauccgGCCuaUCGAGgCCCGcguGGCg -3'
miRNA:   3'- auuCGCGCGa----UGG--AGCUCgGGGC---UUG- -5'
23699 3' -57.7 NC_005261.1 + 74091 0.71 0.51961
Target:  5'- --uGUGCGCgACCUCGcccCCCCGGGCc -3'
miRNA:   3'- auuCGCGCGaUGGAGCuc-GGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 72652 0.67 0.733012
Target:  5'- --uGgGgGCcGCCUCGGGCCCCcccGGCg -3'
miRNA:   3'- auuCgCgCGaUGGAGCUCGGGGc--UUG- -5'
23699 3' -57.7 NC_005261.1 + 71343 0.68 0.703016
Target:  5'- cGAGCGCGU--CCUCGgugAGCgCCGAGa -3'
miRNA:   3'- aUUCGCGCGauGGAGC---UCGgGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 71225 0.66 0.775488
Target:  5'- --cGCGCGCgcacgcgGCCcucggcggcgcagcCGAGCCCCGcGCc -3'
miRNA:   3'- auuCGCGCGa------UGGa-------------GCUCGGGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 69637 0.67 0.713088
Target:  5'- --cGUGCGCUACCUgCGcGCCCuCGucAACc -3'
miRNA:   3'- auuCGCGCGAUGGA-GCuCGGG-GC--UUG- -5'
23699 3' -57.7 NC_005261.1 + 69371 0.74 0.365755
Target:  5'- --cGCGCGCUggACCUCGAgaugaccgccGUCCUGAGCc -3'
miRNA:   3'- auuCGCGCGA--UGGAGCU----------CGGGGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.