Results 101 - 120 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 68973 | 0.66 | 0.790352 |
Target: 5'- --uGCGCGCcACCgcggcccuuuUCGGGCCgCgCGGGCg -3' miRNA: 3'- auuCGCGCGaUGG----------AGCUCGG-G-GCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 68572 | 0.7 | 0.59018 |
Target: 5'- uUGAGCGCGUcGCCgccgaggCGGGCCgCGGGa -3' miRNA: 3'- -AUUCGCGCGaUGGa------GCUCGGgGCUUg -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 68180 | 0.69 | 0.641632 |
Target: 5'- --cGCGCGC-GCCgCGGGCCCCc--- -3' miRNA: 3'- auuCGCGCGaUGGaGCUCGGGGcuug -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 66015 | 0.66 | 0.794012 |
Target: 5'- --cGCGCGCcACCgccggcgcgucguagUCGgcggccacggccAGCCCCGGGCc -3' miRNA: 3'- auuCGCGCGaUGG---------------AGC------------UCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 62308 | 0.66 | 0.790352 |
Target: 5'- cGGGCGCGCggcgGCCccgCGGuCCCCcAGCg -3' miRNA: 3'- aUUCGCGCGa---UGGa--GCUcGGGGcUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 61948 | 0.69 | 0.608662 |
Target: 5'- gGGGCGCGCgccgACCgcgucccccagcCGGGUCgCCGAGCu -3' miRNA: 3'- aUUCGCGCGa---UGGa-----------GCUCGG-GGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 61405 | 0.69 | 0.621018 |
Target: 5'- cGGGCGCGUggugGCCUCGcaggaccuGGCCUCGcuGACc -3' miRNA: 3'- aUUCGCGCGa---UGGAGC--------UCGGGGC--UUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 60404 | 0.67 | 0.762208 |
Target: 5'- -uGGCGCcggGCcgGCC-CGGGCCCgGGGCc -3' miRNA: 3'- auUCGCG---CGa-UGGaGCUCGGGgCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 59111 | 0.68 | 0.6694 |
Target: 5'- cAGGCGCGCgcgagcuccccgGCCacCGAcucaggccggcgcGCCCCGGGCg -3' miRNA: 3'- aUUCGCGCGa-----------UGGa-GCU-------------CGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 57399 | 0.68 | 0.690851 |
Target: 5'- gGAGCGCGCccgugauccgcgGCCggcgccgCGAGCCCaGGAUg -3' miRNA: 3'- aUUCGCGCGa-----------UGGa------GCUCGGGgCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 56612 | 0.7 | 0.59018 |
Target: 5'- cAAGCGCGCgcGCgUgGAGCCCCccAGCg -3' miRNA: 3'- aUUCGCGCGa-UGgAgCUCGGGGc-UUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 55740 | 0.73 | 0.399098 |
Target: 5'- cGGGCGUGCUGCCggaCG-GCCUCGAcGCg -3' miRNA: 3'- aUUCGCGCGAUGGa--GCuCGGGGCU-UG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 55426 | 0.69 | 0.631325 |
Target: 5'- -cGGCugGCGCcACCgCGAGCCCucCGAGCg -3' miRNA: 3'- auUCG--CGCGaUGGaGCUCGGG--GCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 53879 | 0.66 | 0.799456 |
Target: 5'- --cGCGCGCUGUCgagucgaagCGGGCCCgcuucgCGAGCg -3' miRNA: 3'- auuCGCGCGAUGGa--------GCUCGGG------GCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 52667 | 0.66 | 0.808407 |
Target: 5'- --cGCGCGC-ACUUCGAgcggGCCCUGcuCg -3' miRNA: 3'- auuCGCGCGaUGGAGCU----CGGGGCuuG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 51897 | 0.67 | 0.752581 |
Target: 5'- -cGGCGCGCUACaUCG---CCCGGGCg -3' miRNA: 3'- auUCGCGCGAUGgAGCucgGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 51415 | 0.77 | 0.240396 |
Target: 5'- --cGCGCGCccaccGCCUgcUGGGCCCCGGGCg -3' miRNA: 3'- auuCGCGCGa----UGGA--GCUCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 51225 | 0.7 | 0.559619 |
Target: 5'- cUGGGCGCGCUagccGCCUgGAcGCUCCaGGCg -3' miRNA: 3'- -AUUCGCGCGA----UGGAgCU-CGGGGcUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 49868 | 0.72 | 0.452599 |
Target: 5'- gAAGCGCGCgg---CGAGCUCCGAGa -3' miRNA: 3'- aUUCGCGCGauggaGCUCGGGGCUUg -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 49308 | 0.68 | 0.651932 |
Target: 5'- gUGAGCGcCGCgcagcCCUCGAG-CCgGAACu -3' miRNA: 3'- -AUUCGC-GCGau---GGAGCUCgGGgCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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