Results 121 - 140 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 49101 | 0.72 | 0.443409 |
Target: 5'- cUGAGCGCGCgcagcagcuCCUCGAGCgCggCGGGCg -3' miRNA: 3'- -AUUCGCGCGau-------GGAGCUCGgG--GCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 48665 | 0.66 | 0.808407 |
Target: 5'- aGAGcCGCGCggcaacggcgACUaCGGGCCCgCGGGCc -3' miRNA: 3'- aUUC-GCGCGa---------UGGaGCUCGGG-GCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 48547 | 0.74 | 0.365755 |
Target: 5'- --uGCGUGCUcuucuGCagcCGGGCCCCGAACa -3' miRNA: 3'- auuCGCGCGA-----UGga-GCUCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 48287 | 0.67 | 0.762208 |
Target: 5'- cAAGCGcCGCUuccagcgagGCCUCGgggggcgcgucGGgCCCGGGCu -3' miRNA: 3'- aUUCGC-GCGA---------UGGAGC-----------UCgGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 46995 | 0.66 | 0.799456 |
Target: 5'- -cAGCGCGCgccgcGCCgccgCGAugcggcgguccaGCCCCGcGACg -3' miRNA: 3'- auUCGCGCGa----UGGa---GCU------------CGGGGC-UUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 46776 | 0.71 | 0.490357 |
Target: 5'- gGAGCGag--GgCUUGAGCCCCGGGCg -3' miRNA: 3'- aUUCGCgcgaUgGAGCUCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 46578 | 0.78 | 0.207377 |
Target: 5'- cGAGCGCG--GCCUCGcgcgacacGGCCCCGGGCa -3' miRNA: 3'- aUUCGCGCgaUGGAGC--------UCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 46069 | 0.71 | 0.529515 |
Target: 5'- gAAGgGCGCcGCCUCGuGGCCggacaCGAGCa -3' miRNA: 3'- aUUCgCGCGaUGGAGC-UCGGg----GCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 44729 | 0.78 | 0.212594 |
Target: 5'- -cAGgGCGCUGCagcUGGGCCCCGAGCu -3' miRNA: 3'- auUCgCGCGAUGga-GCUCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 44468 | 0.71 | 0.51961 |
Target: 5'- gGAGCugcuGCGCUGCUUCaAGCuggCCCGGACg -3' miRNA: 3'- aUUCG----CGCGAUGGAGcUCG---GGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 44306 | 0.68 | 0.682701 |
Target: 5'- aGGGC-CGCUGCCcgCGGGCgCCGcaGACg -3' miRNA: 3'- aUUCGcGCGAUGGa-GCUCGgGGC--UUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 43141 | 0.67 | 0.713088 |
Target: 5'- --cGCGCGCgcgGCCUgCGcGCCgCCGAc- -3' miRNA: 3'- auuCGCGCGa--UGGA-GCuCGG-GGCUug -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 42241 | 0.67 | 0.752581 |
Target: 5'- --cGCGCGCagcGCCUCGAacuGCCCgCGcgaGGCg -3' miRNA: 3'- auuCGCGCGa--UGGAGCU---CGGG-GC---UUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 42158 | 0.67 | 0.742845 |
Target: 5'- --cGCGCGaacGCCggaagCGAGCCgUGGACg -3' miRNA: 3'- auuCGCGCga-UGGa----GCUCGGgGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 41411 | 0.71 | 0.480775 |
Target: 5'- cGAGCGCGCcACgaCGAGUCCCuuggccGAGCa -3' miRNA: 3'- aUUCGCGCGaUGgaGCUCGGGG------CUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 40856 | 0.71 | 0.480775 |
Target: 5'- aGGGCGCGU--CCgCGAaggccGCCCCGAACa -3' miRNA: 3'- aUUCGCGCGauGGaGCU-----CGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 39435 | 0.74 | 0.365755 |
Target: 5'- -cGGCGCGU--CCgcaGGGCCCCGAGCc -3' miRNA: 3'- auUCGCGCGauGGag-CUCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 39398 | 0.66 | 0.799456 |
Target: 5'- -uGGCG-GCgACC-CGAGCCCC-AGCg -3' miRNA: 3'- auUCGCgCGaUGGaGCUCGGGGcUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 38523 | 0.69 | 0.631325 |
Target: 5'- --cGCGCGCUGgCUgCGcGCgCCGGGCa -3' miRNA: 3'- auuCGCGCGAUgGA-GCuCGgGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 38345 | 0.67 | 0.72309 |
Target: 5'- gGGGCGCGCacGCCcagCGGGCCUUugGGGCg -3' miRNA: 3'- aUUCGCGCGa-UGGa--GCUCGGGG--CUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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