miRNA display CGI


Results 41 - 60 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 44729 0.78 0.212594
Target:  5'- -cAGgGCGCUGCagcUGGGCCCCGAGCu -3'
miRNA:   3'- auUCgCGCGAUGga-GCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 46578 0.78 0.207377
Target:  5'- cGAGCGCG--GCCUCGcgcgacacGGCCCCGGGCa -3'
miRNA:   3'- aUUCGCGCgaUGGAGC--------UCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 117383 0.78 0.197273
Target:  5'- gAGGCGCGCUGCUUCGgcggGGCgCCCGAc- -3'
miRNA:   3'- aUUCGCGCGAUGGAGC----UCG-GGGCUug -5'
23699 3' -57.7 NC_005261.1 + 102772 0.78 0.192384
Target:  5'- cGAGCGCGCccgagGCCUCGccccGGCCgCGAGCg -3'
miRNA:   3'- aUUCGCGCGa----UGGAGC----UCGGgGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 3820 0.79 0.17835
Target:  5'- --cGCGCGCUGCCgCGGGC-CCGGGCg -3'
miRNA:   3'- auuCGCGCGAUGGaGCUCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 10505 0.75 0.326854
Target:  5'- --uGCGCGCggccGCCgcugCGGGCCCCGcGGCg -3'
miRNA:   3'- auuCGCGCGa---UGGa---GCUCGGGGC-UUG- -5'
23699 3' -57.7 NC_005261.1 + 93590 0.74 0.342038
Target:  5'- --cGCGCGCUcggcgACCUCGccgucGCCCCGggUc -3'
miRNA:   3'- auuCGCGCGA-----UGGAGCu----CGGGGCuuG- -5'
23699 3' -57.7 NC_005261.1 + 94844 0.72 0.452599
Target:  5'- -cGGCGCGCcugGCCUCGGcGCucgcgcacggCCCGGGCg -3'
miRNA:   3'- auUCGCGCGa--UGGAGCU-CG----------GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 49868 0.72 0.452599
Target:  5'- gAAGCGCGCgg---CGAGCUCCGAGa -3'
miRNA:   3'- aUUCGCGCGauggaGCUCGGGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 49101 0.72 0.443409
Target:  5'- cUGAGCGCGCgcagcagcuCCUCGAGCgCggCGGGCg -3'
miRNA:   3'- -AUUCGCGCGau-------GGAGCUCGgG--GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 11639 0.72 0.443409
Target:  5'- --cGCgGCGCccCCUCGAGCCCCGc-- -3'
miRNA:   3'- auuCG-CGCGauGGAGCUCGGGGCuug -5'
23699 3' -57.7 NC_005261.1 + 83757 0.73 0.399098
Target:  5'- -cGGCGCGCcacgGCCgggUCGcAGCgCCCGAGCa -3'
miRNA:   3'- auUCGCGCGa---UGG---AGC-UCG-GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 76475 0.73 0.399098
Target:  5'- -cGGCGCGCgcgcggACCcCGAGCCCUcGGCg -3'
miRNA:   3'- auUCGCGCGa-----UGGaGCUCGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 55740 0.73 0.399098
Target:  5'- cGGGCGUGCUGCCggaCG-GCCUCGAcGCg -3'
miRNA:   3'- aUUCGCGCGAUGGa--GCuCGGGGCU-UG- -5'
23699 3' -57.7 NC_005261.1 + 28580 0.73 0.398241
Target:  5'- gAGGCGCGCgagcGCCggCGGGCCgcccgcgCCGAGCu -3'
miRNA:   3'- aUUCGCGCGa---UGGa-GCUCGG-------GGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 88492 0.74 0.365755
Target:  5'- gGAGCGCGCcGCgCUCGAcccgcGCUUCGAGCg -3'
miRNA:   3'- aUUCGCGCGaUG-GAGCU-----CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 69371 0.74 0.365755
Target:  5'- --cGCGCGCUggACCUCGAgaugaccgccGUCCUGAGCc -3'
miRNA:   3'- auuCGCGCGA--UGGAGCU----------CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 39435 0.74 0.365755
Target:  5'- -cGGCGCGU--CCgcaGGGCCCCGAGCc -3'
miRNA:   3'- auUCGCGCGauGGag-CUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 48547 0.74 0.365755
Target:  5'- --uGCGUGCUcuucuGCagcCGGGCCCCGAACa -3'
miRNA:   3'- auuCGCGCGA-----UGga-GCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 75847 0.74 0.349819
Target:  5'- gGGGCGCGCggcGCCgacggCG-GCCCCGAcgGCg -3'
miRNA:   3'- aUUCGCGCGa--UGGa----GCuCGGGGCU--UG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.