miRNA display CGI


Results 81 - 100 of 191 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 83894 0.71 0.490357
Target:  5'- cUGAGCGCGggGCCgcCGGGCUCgGGACc -3'
miRNA:   3'- -AUUCGCGCgaUGGa-GCUCGGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 119658 0.71 0.500026
Target:  5'- -cGGCGCGC-GCCUgGAGCUCUGGu- -3'
miRNA:   3'- auUCGCGCGaUGGAgCUCGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 120327 0.71 0.500026
Target:  5'- gAGGCGCGCUGCgU----CCCCGAGCg -3'
miRNA:   3'- aUUCGCGCGAUGgAgcucGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 4159 0.71 0.509778
Target:  5'- cAGGCGCGCcagcUGCaggucCGGGCCCgCGAGCu -3'
miRNA:   3'- aUUCGCGCG----AUGga---GCUCGGG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 100704 0.71 0.509778
Target:  5'- -cGGCGCGCgccGCC-CGAGCCgCGGccGCg -3'
miRNA:   3'- auUCGCGCGa--UGGaGCUCGGgGCU--UG- -5'
23699 3' -57.7 NC_005261.1 + 12722 0.71 0.51961
Target:  5'- cGGGCGCGCggGCC-CGccGGCCCCcuGGGCg -3'
miRNA:   3'- aUUCGCGCGa-UGGaGC--UCGGGG--CUUG- -5'
23699 3' -57.7 NC_005261.1 + 44468 0.71 0.51961
Target:  5'- gGAGCugcuGCGCUGCUUCaAGCuggCCCGGACg -3'
miRNA:   3'- aUUCG----CGCGAUGGAGcUCG---GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 137777 0.71 0.480775
Target:  5'- gGGGCGCGCc-CC-CGGGCCCCGc-- -3'
miRNA:   3'- aUUCGCGCGauGGaGCUCGGGGCuug -5'
23699 3' -57.7 NC_005261.1 + 40856 0.71 0.480775
Target:  5'- aGGGCGCGU--CCgCGAaggccGCCCCGAACa -3'
miRNA:   3'- aUUCGCGCGauGGaGCU-----CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 94 0.71 0.480775
Target:  5'- gGGGCGCGCc-CC-CGGGCCCCGc-- -3'
miRNA:   3'- aUUCGCGCGauGGaGCUCGGGGCuug -5'
23699 3' -57.7 NC_005261.1 + 49101 0.72 0.443409
Target:  5'- cUGAGCGCGCgcagcagcuCCUCGAGCgCggCGGGCg -3'
miRNA:   3'- -AUUCGCGCGau-------GGAGCUCGgG--GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 49868 0.72 0.452599
Target:  5'- gAAGCGCGCgg---CGAGCUCCGAGa -3'
miRNA:   3'- aUUCGCGCGauggaGCUCGGGGCUUg -5'
23699 3' -57.7 NC_005261.1 + 94844 0.72 0.452599
Target:  5'- -cGGCGCGCcugGCCUCGGcGCucgcgcacggCCCGGGCg -3'
miRNA:   3'- auUCGCGCGa--UGGAGCU-CG----------GGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 106960 0.72 0.461893
Target:  5'- cGGGCGCGCUccGCCUCGGcgcgcGCgCCGcGCa -3'
miRNA:   3'- aUUCGCGCGA--UGGAGCU-----CGgGGCuUG- -5'
23699 3' -57.7 NC_005261.1 + 34682 0.72 0.461893
Target:  5'- -cAGCGCGCUGCgUgacggUGGGCCCCucGCa -3'
miRNA:   3'- auUCGCGCGAUGgA-----GCUCGGGGcuUG- -5'
23699 3' -57.7 NC_005261.1 + 84375 0.72 0.461893
Target:  5'- --cGCGgGCUcgGCCUCGGccgccGCCUCGAGCu -3'
miRNA:   3'- auuCGCgCGA--UGGAGCU-----CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 131775 0.72 0.461893
Target:  5'- cGGGCGCGCcGCU--GGGCCCCGAc- -3'
miRNA:   3'- aUUCGCGCGaUGGagCUCGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 97764 0.72 0.4694
Target:  5'- -cGGCgGCGCgGCCggcaucgacuccCGAGCCCCGGGCc -3'
miRNA:   3'- auUCG-CGCGaUGGa-----------GCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 97863 0.72 0.4694
Target:  5'- -cGGCaGCGCgGCCggcaucgauuucCGAGCCCCGGGCc -3'
miRNA:   3'- auUCG-CGCGaUGGa-----------GCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 134110 0.71 0.477919
Target:  5'- --cGCGCGCUcgccgccgacuuccGCCUCGAcCCCCuGGGCu -3'
miRNA:   3'- auuCGCGCGA--------------UGGAGCUcGGGG-CUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.