miRNA display CGI


Results 101 - 120 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 3' -57.7 NC_005261.1 + 46069 0.71 0.529515
Target:  5'- gAAGgGCGCcGCCUCGuGGCCggacaCGAGCa -3'
miRNA:   3'- aUUCgCGCGaUGGAGC-UCGGg----GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 102255 0.71 0.529515
Target:  5'- --uGCGCGCUcGCCUCcAGCgCCCGGu- -3'
miRNA:   3'- auuCGCGCGA-UGGAGcUCG-GGGCUug -5'
23699 3' -57.7 NC_005261.1 + 101900 0.71 0.529515
Target:  5'- --cGCGCGCUccuCCUCGAaagccgcguGCCCCcGGCg -3'
miRNA:   3'- auuCGCGCGAu--GGAGCU---------CGGGGcUUG- -5'
23699 3' -57.7 NC_005261.1 + 76605 0.7 0.539488
Target:  5'- --cGCGCGCUGCCgccCGccGCCCCGcuGCc -3'
miRNA:   3'- auuCGCGCGAUGGa--GCu-CGGGGCu-UG- -5'
23699 3' -57.7 NC_005261.1 + 102445 0.7 0.558607
Target:  5'- -cGGCGCGCcgcccgGCCUCGgcgcgcaGGCgCCGGACc -3'
miRNA:   3'- auUCGCGCGa-----UGGAGC-------UCGgGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 4159 0.71 0.509778
Target:  5'- cAGGCGCGCcagcUGCaggucCGGGCCCgCGAGCu -3'
miRNA:   3'- aUUCGCGCG----AUGga---GCUCGGG-GCUUG- -5'
23699 3' -57.7 NC_005261.1 + 120327 0.71 0.500026
Target:  5'- gAGGCGCGCUGCgU----CCCCGAGCg -3'
miRNA:   3'- aUUCGCGCGAUGgAgcucGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 84375 0.72 0.461893
Target:  5'- --cGCGgGCUcgGCCUCGGccgccGCCUCGAGCu -3'
miRNA:   3'- auuCGCgCGA--UGGAGCU-----CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 131775 0.72 0.461893
Target:  5'- cGGGCGCGCcGCU--GGGCCCCGAc- -3'
miRNA:   3'- aUUCGCGCGaUGGagCUCGGGGCUug -5'
23699 3' -57.7 NC_005261.1 + 97764 0.72 0.4694
Target:  5'- -cGGCgGCGCgGCCggcaucgacuccCGAGCCCCGGGCc -3'
miRNA:   3'- auUCG-CGCGaUGGa-----------GCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 97863 0.72 0.4694
Target:  5'- -cGGCaGCGCgGCCggcaucgauuucCGAGCCCCGGGCc -3'
miRNA:   3'- auUCG-CGCGaUGGa-----------GCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 134110 0.71 0.477919
Target:  5'- --cGCGCGCUcgccgccgacuuccGCCUCGAcCCCCuGGGCu -3'
miRNA:   3'- auuCGCGCGA--------------UGGAGCUcGGGG-CUUG- -5'
23699 3' -57.7 NC_005261.1 + 94 0.71 0.480775
Target:  5'- gGGGCGCGCc-CC-CGGGCCCCGc-- -3'
miRNA:   3'- aUUCGCGCGauGGaGCUCGGGGCuug -5'
23699 3' -57.7 NC_005261.1 + 40856 0.71 0.480775
Target:  5'- aGGGCGCGU--CCgCGAaggccGCCCCGAACa -3'
miRNA:   3'- aUUCGCGCGauGGaGCU-----CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 137777 0.71 0.480775
Target:  5'- gGGGCGCGCc-CC-CGGGCCCCGc-- -3'
miRNA:   3'- aUUCGCGCGauGGaGCUCGGGGCuug -5'
23699 3' -57.7 NC_005261.1 + 106476 0.71 0.480775
Target:  5'- aGAGCGCcggGCUccCCUCGucGCCCUGGACu -3'
miRNA:   3'- aUUCGCG---CGAu-GGAGCu-CGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 41411 0.71 0.480775
Target:  5'- cGAGCGCGCcACgaCGAGUCCCuuggccGAGCa -3'
miRNA:   3'- aUUCGCGCGaUGgaGCUCGGGG------CUUG- -5'
23699 3' -57.7 NC_005261.1 + 46776 0.71 0.490357
Target:  5'- gGAGCGag--GgCUUGAGCCCCGGGCg -3'
miRNA:   3'- aUUCGCgcgaUgGAGCUCGGGGCUUG- -5'
23699 3' -57.7 NC_005261.1 + 83894 0.71 0.490357
Target:  5'- cUGAGCGCGggGCCgcCGGGCUCgGGACc -3'
miRNA:   3'- -AUUCGCGCgaUGGa-GCUCGGGgCUUG- -5'
23699 3' -57.7 NC_005261.1 + 119658 0.71 0.500026
Target:  5'- -cGGCGCGC-GCCUgGAGCUCUGGu- -3'
miRNA:   3'- auUCGCGCGaUGGAgCUCGGGGCUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.