Results 121 - 140 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 82000 | 0.69 | 0.600438 |
Target: 5'- --uGCGCGCUGCCgucgaaGAGCggCCCGuuGACg -3' miRNA: 3'- auuCGCGCGAUGGag----CUCG--GGGC--UUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 12019 | 0.69 | 0.600438 |
Target: 5'- gAAGCGCucgcccGCgacGCgCUCGAGCCCCagccgGAGCa -3' miRNA: 3'- aUUCGCG------CGa--UG-GAGCUCGGGG-----CUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 5589 | 0.71 | 0.529515 |
Target: 5'- cGAGgGCGCccGCCUCGAGgCCCCc--- -3' miRNA: 3'- aUUCgCGCGa-UGGAGCUC-GGGGcuug -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 129373 | 0.71 | 0.51961 |
Target: 5'- cGGGuCGCGCgGCUUCGGGuCCaCCGGGCu -3' miRNA: 3'- aUUC-GCGCGaUGGAGCUC-GG-GGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 94609 | 0.71 | 0.51961 |
Target: 5'- cGAGCGCGCgcCCUCGccGCCgCCGGc- -3' miRNA: 3'- aUUCGCGCGauGGAGCu-CGG-GGCUug -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 94 | 0.71 | 0.480775 |
Target: 5'- gGGGCGCGCc-CC-CGGGCCCCGc-- -3' miRNA: 3'- aUUCGCGCGauGGaGCUCGGGGCuug -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 40856 | 0.71 | 0.480775 |
Target: 5'- aGGGCGCGU--CCgCGAaggccGCCCCGAACa -3' miRNA: 3'- aUUCGCGCGauGGaGCU-----CGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 137777 | 0.71 | 0.480775 |
Target: 5'- gGGGCGCGCc-CC-CGGGCCCCGc-- -3' miRNA: 3'- aUUCGCGCGauGGaGCUCGGGGCuug -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 106476 | 0.71 | 0.480775 |
Target: 5'- aGAGCGCcggGCUccCCUCGucGCCCUGGACu -3' miRNA: 3'- aUUCGCG---CGAu-GGAGCu-CGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 41411 | 0.71 | 0.480775 |
Target: 5'- cGAGCGCGCcACgaCGAGUCCCuuggccGAGCa -3' miRNA: 3'- aUUCGCGCGaUGgaGCUCGGGG------CUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 46776 | 0.71 | 0.490357 |
Target: 5'- gGAGCGag--GgCUUGAGCCCCGGGCg -3' miRNA: 3'- aUUCGCgcgaUgGAGCUCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 83894 | 0.71 | 0.490357 |
Target: 5'- cUGAGCGCGggGCCgcCGGGCUCgGGACc -3' miRNA: 3'- -AUUCGCGCgaUGGa-GCUCGGGgCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 119658 | 0.71 | 0.500026 |
Target: 5'- -cGGCGCGC-GCCUgGAGCUCUGGu- -3' miRNA: 3'- auUCGCGCGaUGGAgCUCGGGGCUug -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 120327 | 0.71 | 0.500026 |
Target: 5'- gAGGCGCGCUGCgU----CCCCGAGCg -3' miRNA: 3'- aUUCGCGCGAUGgAgcucGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 4159 | 0.71 | 0.509778 |
Target: 5'- cAGGCGCGCcagcUGCaggucCGGGCCCgCGAGCu -3' miRNA: 3'- aUUCGCGCG----AUGga---GCUCGGG-GCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 100704 | 0.71 | 0.509778 |
Target: 5'- -cGGCGCGCgccGCC-CGAGCCgCGGccGCg -3' miRNA: 3'- auUCGCGCGa--UGGaGCUCGGgGCU--UG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 12722 | 0.71 | 0.51961 |
Target: 5'- cGGGCGCGCggGCC-CGccGGCCCCcuGGGCg -3' miRNA: 3'- aUUCGCGCGa-UGGaGC--UCGGGG--CUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 44468 | 0.71 | 0.51961 |
Target: 5'- gGAGCugcuGCGCUGCUUCaAGCuggCCCGGACg -3' miRNA: 3'- aUUCG----CGCGAUGGAGcUCG---GGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 74091 | 0.71 | 0.51961 |
Target: 5'- --uGUGCGCgACCUCGcccCCCCGGGCc -3' miRNA: 3'- auuCGCGCGaUGGAGCuc-GGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 92161 | 0.71 | 0.51961 |
Target: 5'- cGAGCGCGC-GCUcggUgGAGCCgCCGGGCc -3' miRNA: 3'- aUUCGCGCGaUGG---AgCUCGG-GGCUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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