Results 101 - 120 of 191 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23699 | 3' | -57.7 | NC_005261.1 | + | 46069 | 0.71 | 0.529515 |
Target: 5'- gAAGgGCGCcGCCUCGuGGCCggacaCGAGCa -3' miRNA: 3'- aUUCgCGCGaUGGAGC-UCGGg----GCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 102255 | 0.71 | 0.529515 |
Target: 5'- --uGCGCGCUcGCCUCcAGCgCCCGGu- -3' miRNA: 3'- auuCGCGCGA-UGGAGcUCG-GGGCUug -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 101900 | 0.71 | 0.529515 |
Target: 5'- --cGCGCGCUccuCCUCGAaagccgcguGCCCCcGGCg -3' miRNA: 3'- auuCGCGCGAu--GGAGCU---------CGGGGcUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 76605 | 0.7 | 0.539488 |
Target: 5'- --cGCGCGCUGCCgccCGccGCCCCGcuGCc -3' miRNA: 3'- auuCGCGCGAUGGa--GCu-CGGGGCu-UG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 102445 | 0.7 | 0.558607 |
Target: 5'- -cGGCGCGCcgcccgGCCUCGgcgcgcaGGCgCCGGACc -3' miRNA: 3'- auUCGCGCGa-----UGGAGC-------UCGgGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 4159 | 0.71 | 0.509778 |
Target: 5'- cAGGCGCGCcagcUGCaggucCGGGCCCgCGAGCu -3' miRNA: 3'- aUUCGCGCG----AUGga---GCUCGGG-GCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 120327 | 0.71 | 0.500026 |
Target: 5'- gAGGCGCGCUGCgU----CCCCGAGCg -3' miRNA: 3'- aUUCGCGCGAUGgAgcucGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 84375 | 0.72 | 0.461893 |
Target: 5'- --cGCGgGCUcgGCCUCGGccgccGCCUCGAGCu -3' miRNA: 3'- auuCGCgCGA--UGGAGCU-----CGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 131775 | 0.72 | 0.461893 |
Target: 5'- cGGGCGCGCcGCU--GGGCCCCGAc- -3' miRNA: 3'- aUUCGCGCGaUGGagCUCGGGGCUug -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 97764 | 0.72 | 0.4694 |
Target: 5'- -cGGCgGCGCgGCCggcaucgacuccCGAGCCCCGGGCc -3' miRNA: 3'- auUCG-CGCGaUGGa-----------GCUCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 97863 | 0.72 | 0.4694 |
Target: 5'- -cGGCaGCGCgGCCggcaucgauuucCGAGCCCCGGGCc -3' miRNA: 3'- auUCG-CGCGaUGGa-----------GCUCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 134110 | 0.71 | 0.477919 |
Target: 5'- --cGCGCGCUcgccgccgacuuccGCCUCGAcCCCCuGGGCu -3' miRNA: 3'- auuCGCGCGA--------------UGGAGCUcGGGG-CUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 94 | 0.71 | 0.480775 |
Target: 5'- gGGGCGCGCc-CC-CGGGCCCCGc-- -3' miRNA: 3'- aUUCGCGCGauGGaGCUCGGGGCuug -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 40856 | 0.71 | 0.480775 |
Target: 5'- aGGGCGCGU--CCgCGAaggccGCCCCGAACa -3' miRNA: 3'- aUUCGCGCGauGGaGCU-----CGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 137777 | 0.71 | 0.480775 |
Target: 5'- gGGGCGCGCc-CC-CGGGCCCCGc-- -3' miRNA: 3'- aUUCGCGCGauGGaGCUCGGGGCuug -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 106476 | 0.71 | 0.480775 |
Target: 5'- aGAGCGCcggGCUccCCUCGucGCCCUGGACu -3' miRNA: 3'- aUUCGCG---CGAu-GGAGCu-CGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 41411 | 0.71 | 0.480775 |
Target: 5'- cGAGCGCGCcACgaCGAGUCCCuuggccGAGCa -3' miRNA: 3'- aUUCGCGCGaUGgaGCUCGGGG------CUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 46776 | 0.71 | 0.490357 |
Target: 5'- gGAGCGag--GgCUUGAGCCCCGGGCg -3' miRNA: 3'- aUUCGCgcgaUgGAGCUCGGGGCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 83894 | 0.71 | 0.490357 |
Target: 5'- cUGAGCGCGggGCCgcCGGGCUCgGGACc -3' miRNA: 3'- -AUUCGCGCgaUGGa-GCUCGGGgCUUG- -5' |
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23699 | 3' | -57.7 | NC_005261.1 | + | 119658 | 0.71 | 0.500026 |
Target: 5'- -cGGCGCGC-GCCUgGAGCUCUGGu- -3' miRNA: 3'- auUCGCGCGaUGGAgCUCGGGGCUug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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