miRNA display CGI


Results 61 - 80 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 5' -59.3 NC_005261.1 + 83862 0.69 0.549619
Target:  5'- uGGGCUGGGccgggccggacgccGGGucagcucuGAGCGCGGGGC-CGCc -3'
miRNA:   3'- -CUCGACCC--------------UUC--------CUCGCGCCUCGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 9632 0.69 0.552617
Target:  5'- gGGGgUGGGGgcuGGGuGgGCGGGGCcCACu -3'
miRNA:   3'- -CUCgACCCU---UCCuCgCGCCUCGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 38265 0.69 0.542647
Target:  5'- cAGcCUGGGcuGGGGGCGgcUGGuGCACGCg -3'
miRNA:   3'- cUC-GACCCu-UCCUCGC--GCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 118671 0.7 0.44707
Target:  5'- gGGGCUGaGGgcGGcgGGCGCuGGcGCACGCg -3'
miRNA:   3'- -CUCGAC-CCuuCC--UCGCG-CCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 136555 0.7 0.456224
Target:  5'- cAGCUGGuGggGGcagaaGGCGCGGgugGGCGgGCg -3'
miRNA:   3'- cUCGACC-CuuCC-----UCGCGCC---UCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 77223 0.7 0.484271
Target:  5'- uGGCcgggGGGGAGGAGC-CaGAGCGCAg -3'
miRNA:   3'- cUCGa---CCCUUCCUCGcGcCUCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 81349 0.7 0.456224
Target:  5'- cGGCgGGGcGGGGGCuuGCGGGGgGCGCc -3'
miRNA:   3'- cUCGaCCCuUCCUCG--CGCCUCgUGUG- -5'
23699 5' -59.3 NC_005261.1 + 127334 0.7 0.44707
Target:  5'- -cGCggGGGccGGAGCgGCGGGGCGCu- -3'
miRNA:   3'- cuCGa-CCCuuCCUCG-CGCCUCGUGug -5'
23699 5' -59.3 NC_005261.1 + 30815 0.7 0.484271
Target:  5'- gGAGCUGGGggGGcccGGgGaCGGGGC-CGa -3'
miRNA:   3'- -CUCGACCCuuCC---UCgC-GCCUCGuGUg -5'
23699 5' -59.3 NC_005261.1 + 41909 0.7 0.484271
Target:  5'- gGGGUUGGGAuaaggcaggugAGGAcauucuCGCuGGAGCGCACg -3'
miRNA:   3'- -CUCGACCCU-----------UCCUc-----GCG-CCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 69744 0.7 0.484271
Target:  5'- aGGCggagGaGGAGGcGAGCGCGGGGgGCGg -3'
miRNA:   3'- cUCGa---C-CCUUC-CUCGCGCCUCgUGUg -5'
23699 5' -59.3 NC_005261.1 + 32081 0.7 0.484271
Target:  5'- -cGCUGGGGcucgGGGAGCcggacuucGCGGAGgGCGa -3'
miRNA:   3'- cuCGACCCU----UCCUCG--------CGCCUCgUGUg -5'
23699 5' -59.3 NC_005261.1 + 81487 0.7 0.484271
Target:  5'- aGAGCaGGGccgcGGcuAGCGCGGcGCGCGCg -3'
miRNA:   3'- -CUCGaCCCuu--CC--UCGCGCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 26315 0.7 0.493804
Target:  5'- aGAGgUGGGAAGGgagauAGUGagaGGGGCGCGg -3'
miRNA:   3'- -CUCgACCCUUCC-----UCGCg--CCUCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 90197 0.71 0.4029
Target:  5'- -cGCaGGGAgcgcGGGGGCgGCGGAGCGCc- -3'
miRNA:   3'- cuCGaCCCU----UCCUCG-CGCCUCGUGug -5'
23699 5' -59.3 NC_005261.1 + 11791 0.71 0.411513
Target:  5'- gGGGCggagggGGGAAGGGGgGCGGAGgGgGa -3'
miRNA:   3'- -CUCGa-----CCCUUCCUCgCGCCUCgUgUg -5'
23699 5' -59.3 NC_005261.1 + 132519 0.71 0.411513
Target:  5'- cGGGCUGGGAcgAGuacGAGCGCGcccucGCGCGCg -3'
miRNA:   3'- -CUCGACCCU--UC---CUCGCGCcu---CGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 32902 0.71 0.420238
Target:  5'- cGGgaGGGAAGGGGCGCgcguGGGGgGCGg -3'
miRNA:   3'- cUCgaCCCUUCCUCGCG----CCUCgUGUg -5'
23699 5' -59.3 NC_005261.1 + 134180 0.71 0.420238
Target:  5'- -cGCUGcuugcGGAGGGccuGGCGCGGcucGGCGCGCg -3'
miRNA:   3'- cuCGAC-----CCUUCC---UCGCGCC---UCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 11826 0.71 0.438019
Target:  5'- aGAGUggGGGcGGGGGCcccGCGG-GCGCGCg -3'
miRNA:   3'- -CUCGa-CCCuUCCUCG---CGCCuCGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.