Results 61 - 80 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 69517 | 0.68 | 0.572714 |
Target: 5'- cGGGCUGccGGAGcuGGCGCGGgcgcuGGCGCGCg -3' miRNA: 3'- -CUCGAC--CCUUccUCGCGCC-----UCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 5567 | 0.68 | 0.582828 |
Target: 5'- cGAGCgGcGGAgauGGGGGCGCcGAGgGCGCc -3' miRNA: 3'- -CUCGaC-CCU---UCCUCGCGcCUCgUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 21682 | 0.68 | 0.582828 |
Target: 5'- cGGCUGGGGcucGAGCGCGucGCGgGCg -3' miRNA: 3'- cUCGACCCUuc-CUCGCGCcuCGUgUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 991 | 0.68 | 0.582828 |
Target: 5'- aGAGCggaggagacgGGGgcGGGGgGCGGGGgGCGg -3' miRNA: 3'- -CUCGa---------CCCuuCCUCgCGCCUCgUGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 7183 | 0.68 | 0.592978 |
Target: 5'- gGAGaaGGG-GGGAGgGgGGGGUGCGCg -3' miRNA: 3'- -CUCgaCCCuUCCUCgCgCCUCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 24129 | 0.68 | 0.592978 |
Target: 5'- gGGGgUGGGGgcuGGGuGgGCGGGGCuCACc -3' miRNA: 3'- -CUCgACCCU---UCCuCgCGCCUCGuGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 125730 | 0.68 | 0.592978 |
Target: 5'- cGGCUGGGGccgccgcaaGGGGGC-CGGGGC-CAg -3' miRNA: 3'- cUCGACCCU---------UCCUCGcGCCUCGuGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 56114 | 0.68 | 0.592978 |
Target: 5'- cGAGCggcGGGAgcgcgccgcAGG-GCGgGGGGCGCGg -3' miRNA: 3'- -CUCGa--CCCU---------UCCuCGCgCCUCGUGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 33001 | 0.68 | 0.597047 |
Target: 5'- gGGGCcgaccgGGGAAGGGGggaggggggcgccgaUGCGGAGCGucCGCg -3' miRNA: 3'- -CUCGa-----CCCUUCCUC---------------GCGCCUCGU--GUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 13708 | 0.68 | 0.603157 |
Target: 5'- cGGGCUGGGGgcggggguGGGGGUG-GGGGUGgGCu -3' miRNA: 3'- -CUCGACCCU--------UCCUCGCgCCUCGUgUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 1191 | 0.68 | 0.603157 |
Target: 5'- gGGGCcGGGGccGGGCGCGGcGCGgACc -3' miRNA: 3'- -CUCGaCCCUucCUCGCGCCuCGUgUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 105293 | 0.68 | 0.613357 |
Target: 5'- cGAGCccGGGcgcGcGAGCGCGGGGUccucGCACu -3' miRNA: 3'- -CUCGa-CCCuu-C-CUCGCGCCUCG----UGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 137349 | 0.68 | 0.613357 |
Target: 5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3' miRNA: 3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 137307 | 0.68 | 0.613357 |
Target: 5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3' miRNA: 3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 137265 | 0.68 | 0.613357 |
Target: 5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3' miRNA: 3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 137223 | 0.68 | 0.613357 |
Target: 5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3' miRNA: 3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 137181 | 0.68 | 0.613357 |
Target: 5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3' miRNA: 3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 137139 | 0.68 | 0.613357 |
Target: 5'- gGAGCgagGGaGGAGGAGCGagggaggaGGAGCGa-- -3' miRNA: 3'- -CUCGa--CC-CUUCCUCGCg-------CCUCGUgug -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 108904 | 0.67 | 0.623571 |
Target: 5'- -cGCcGGcGAGcGGGGCGCGGGGUcggggcccaGCACg -3' miRNA: 3'- cuCGaCC-CUU-CCUCGCGCCUCG---------UGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 50592 | 0.67 | 0.623571 |
Target: 5'- cGAGCgGGGAGGGcAGgGagaCGGGGCGCc- -3' miRNA: 3'- -CUCGaCCCUUCC-UCgC---GCCUCGUGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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