Results 101 - 110 of 110 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 23699 | 5' | -59.3 | NC_005261.1 | + | 58303 | 0.66 | 0.723728 |
|
Target: 5'- gGGGCgcgGGGAGGGGGCGgcccagcCGcccGAGCAC-Cg -3' miRNA: 3'- -CUCGa--CCCUUCCUCGC-------GC---CUCGUGuG- -5' |
|||||||
| 23699 | 5' | -59.3 | NC_005261.1 | + | 48028 | 0.66 | 0.724715 |
|
Target: 5'- aGAGCaGGGcGAGGAGCaCGc-GCGCGCg -3' miRNA: 3'- -CUCGaCCC-UUCCUCGcGCcuCGUGUG- -5' |
|||||||
| 23699 | 5' | -59.3 | NC_005261.1 | + | 92140 | 0.66 | 0.724715 |
|
Target: 5'- cGGGCUGGGccAGGAcCuCGGcgAGCGCGCg -3' miRNA: 3'- -CUCGACCCu-UCCUcGcGCC--UCGUGUG- -5' |
|||||||
| 23699 | 5' | -59.3 | NC_005261.1 | + | 17722 | 0.66 | 0.73454 |
|
Target: 5'- -uGCccGGGAAucGGAGCGgcgcuCGGAGCGgGCg -3' miRNA: 3'- cuCGa-CCCUU--CCUCGC-----GCCUCGUgUG- -5' |
|||||||
| 23699 | 5' | -59.3 | NC_005261.1 | + | 120428 | 0.66 | 0.73454 |
|
Target: 5'- uGGGCUGGuGAAcauGCGCGGcGUGCGCc -3' miRNA: 3'- -CUCGACC-CUUccuCGCGCCuCGUGUG- -5' |
|||||||
| 23699 | 5' | -59.3 | NC_005261.1 | + | 101685 | 0.66 | 0.73454 |
|
Target: 5'- cGAGCcGGcGAAGcGGGCGUGGucgaAGCGCu- -3' miRNA: 3'- -CUCGaCC-CUUC-CUCGCGCC----UCGUGug -5' |
|||||||
| 23699 | 5' | -59.3 | NC_005261.1 | + | 98920 | 0.66 | 0.73454 |
|
Target: 5'- cGGCgGGGucGGcuGCGgGGGGCAgCGCg -3' miRNA: 3'- cUCGaCCCuuCCu-CGCgCCUCGU-GUG- -5' |
|||||||
| 23699 | 5' | -59.3 | NC_005261.1 | + | 21618 | 0.66 | 0.73454 |
|
Target: 5'- cGAGCUucGGGcGAGGguccccgccccGGCGCGGAcGC-CGCu -3' miRNA: 3'- -CUCGA--CCC-UUCC-----------UCGCGCCU-CGuGUG- -5' |
|||||||
| 23699 | 5' | -59.3 | NC_005261.1 | + | 9126 | 0.66 | 0.73454 |
|
Target: 5'- -cGCcGGGAcuGGGGGCG-GGuGCAgGCa -3' miRNA: 3'- cuCGaCCCU--UCCUCGCgCCuCGUgUG- -5' |
|||||||
| 23699 | 5' | -59.3 | NC_005261.1 | + | 73206 | 0.66 | 0.73454 |
|
Target: 5'- uGGCcccGGGcgccucGAGGGGCGCGGuGGC-CGCg -3' miRNA: 3'- cUCGa--CCC------UUCCUCGCGCC-UCGuGUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home