Results 81 - 100 of 110 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 92696 | 0.71 | 0.420238 |
Target: 5'- cGAGC-GGGAgcGGGAGCG-GGAGCGggaGCg -3' miRNA: 3'- -CUCGaCCCU--UCCUCGCgCCUCGUg--UG- -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 132519 | 0.71 | 0.411513 |
Target: 5'- cGGGCUGGGAcgAGuacGAGCGCGcccucGCGCGCg -3' miRNA: 3'- -CUCGACCCU--UC---CUCGCGCcu---CGUGUG- -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 11791 | 0.71 | 0.411513 |
Target: 5'- gGGGCggagggGGGAAGGGGgGCGGAGgGgGa -3' miRNA: 3'- -CUCGa-----CCCUUCCUCgCGCCUCgUgUg -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 90197 | 0.71 | 0.4029 |
Target: 5'- -cGCaGGGAgcgcGGGGGCgGCGGAGCGCc- -3' miRNA: 3'- cuCGaCCCU----UCCUCG-CGCCUCGUGug -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 44750 | 0.71 | 0.4029 |
Target: 5'- cGAGCUgcgcgcgacccGGGAGcGGAGCG-GGAGC-CGCa -3' miRNA: 3'- -CUCGA-----------CCCUU-CCUCGCgCCUCGuGUG- -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 75835 | 0.72 | 0.386023 |
Target: 5'- -cGCgcccGGGGAGGGGCGCGcGGCGC-Cg -3' miRNA: 3'- cuCGa---CCCUUCCUCGCGCcUCGUGuG- -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 22567 | 0.72 | 0.352915 |
Target: 5'- cGGGgaGGGGAGGGGgagaGCGGcggaggcGGCGCACg -3' miRNA: 3'- -CUCgaCCCUUCCUCg---CGCC-------UCGUGUG- -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 156 | 0.73 | 0.345921 |
Target: 5'- aGGGCUGGc--GGAGUugGCGGGGCugGCg -3' miRNA: 3'- -CUCGACCcuuCCUCG--CGCCUCGugUG- -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 11383 | 0.73 | 0.345921 |
Target: 5'- -uGgaGGGAGGGAGUGUGG-GCGgGCg -3' miRNA: 3'- cuCgaCCCUUCCUCGCGCCuCGUgUG- -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 137839 | 0.73 | 0.345921 |
Target: 5'- aGGGCUGGc--GGAGUugGCGGGGCugGCg -3' miRNA: 3'- -CUCGACCcuuCCUCG--CGCCUCGugUG- -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 48179 | 0.73 | 0.345921 |
Target: 5'- gGGGUggacggGGGAAGGgcaaacagGGCGCGGgccGGCGCGCg -3' miRNA: 3'- -CUCGa-----CCCUUCC--------UCGCGCC---UCGUGUG- -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 98707 | 0.73 | 0.338268 |
Target: 5'- gGAGCUGGGGccGGGGUccgGCcuugGGGGCACGCg -3' miRNA: 3'- -CUCGACCCUu-CCUCG---CG----CCUCGUGUG- -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 32932 | 0.73 | 0.330739 |
Target: 5'- cGGGCgGGGggGGGGCGgGGAGgGgAg -3' miRNA: 3'- -CUCGaCCCuuCCUCGCgCCUCgUgUg -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 57191 | 0.73 | 0.323333 |
Target: 5'- cGGC-GGGAAgGGGGgGgGGGGCGCGCg -3' miRNA: 3'- cUCGaCCCUU-CCUCgCgCCUCGUGUG- -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 512 | 0.73 | 0.316052 |
Target: 5'- aGAGggGGGGAGG-GCGCGG-GCGgGCg -3' miRNA: 3'- -CUCgaCCCUUCCuCGCGCCuCGUgUG- -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 5388 | 0.73 | 0.316052 |
Target: 5'- aGGgaGGGAGGGAGaGCGaGAGCGCGg -3' miRNA: 3'- cUCgaCCCUUCCUCgCGC-CUCGUGUg -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 138183 | 0.73 | 0.316052 |
Target: 5'- aGAGggGGGGAGG-GCGCGG-GCGgGCg -3' miRNA: 3'- -CUCgaCCCUUCCuCGCGCCuCGUgUG- -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 58875 | 0.73 | 0.308895 |
Target: 5'- -cGCUGGGGAGGuccGgGCGGgccucgcaGGCGCGCg -3' miRNA: 3'- cuCGACCCUUCCu--CgCGCC--------UCGUGUG- -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 80066 | 0.74 | 0.301863 |
Target: 5'- cGGGCgcggGGGGcguGGGGGaCGCGGAccgGCGCGCg -3' miRNA: 3'- -CUCGa---CCCU---UCCUC-GCGCCU---CGUGUG- -5' |
|||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 137391 | 0.74 | 0.281509 |
Target: 5'- gGAGCgagGGaGGAGGAGCGagggaGGAGCgaaaGCACg -3' miRNA: 3'- -CUCGa--CC-CUUCCUCGCg----CCUCG----UGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home