miRNA display CGI


Results 61 - 80 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 5' -59.3 NC_005261.1 + 74923 0.69 0.513119
Target:  5'- gGGGgaGGGcGAGGAcggggacugcgGCGCGG-GCGCGCu -3'
miRNA:   3'- -CUCgaCCC-UUCCU-----------CGCGCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 75576 0.71 0.429074
Target:  5'- -cGCUGGGcGGcGGCGCGGcgcucGCGCGCg -3'
miRNA:   3'- cuCGACCCuUCcUCGCGCCu----CGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 75835 0.72 0.386023
Target:  5'- -cGCgcccGGGGAGGGGCGCGcGGCGC-Cg -3'
miRNA:   3'- cuCGa---CCCUUCCUCGCGCcUCGUGuG- -5'
23699 5' -59.3 NC_005261.1 + 77223 0.7 0.484271
Target:  5'- uGGCcgggGGGGAGGAGC-CaGAGCGCAg -3'
miRNA:   3'- cUCGa---CCCUUCCUCGcGcCUCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 80066 0.74 0.301863
Target:  5'- cGGGCgcggGGGGcguGGGGGaCGCGGAccgGCGCGCg -3'
miRNA:   3'- -CUCGa---CCCU---UCCUC-GCGCCU---CGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 81278 0.67 0.644011
Target:  5'- -cGcCUGcGcGAGccGGAGCGCGGcGCGCACg -3'
miRNA:   3'- cuC-GAC-C-CUU--CCUCGCGCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 81349 0.7 0.456224
Target:  5'- cGGCgGGGcGGGGGCuuGCGGGGgGCGCc -3'
miRNA:   3'- cUCGaCCCuUCCUCG--CGCCUCgUGUG- -5'
23699 5' -59.3 NC_005261.1 + 81487 0.7 0.484271
Target:  5'- aGAGCaGGGccgcGGcuAGCGCGGcGCGCGCg -3'
miRNA:   3'- -CUCGaCCCuu--CC--UCGCGCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 83862 0.69 0.549619
Target:  5'- uGGGCUGGGccgggccggacgccGGGucagcucuGAGCGCGGGGC-CGCc -3'
miRNA:   3'- -CUCGACCC--------------UUC--------CUCGCGCCUCGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 84108 0.66 0.693793
Target:  5'- gGGGCgggaugGGGAGGGGGgcaGCGGGcggggucGCugGCg -3'
miRNA:   3'- -CUCGa-----CCCUUCCUCg--CGCCU-------CGugUG- -5'
23699 5' -59.3 NC_005261.1 + 88464 0.69 0.532737
Target:  5'- uGAGCgugUGGGcGGGccgugccGCGcCGGAGCGCGCc -3'
miRNA:   3'- -CUCG---ACCCuUCCu------CGC-GCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 90197 0.71 0.4029
Target:  5'- -cGCaGGGAgcgcGGGGGCgGCGGAGCGCc- -3'
miRNA:   3'- cuCGaCCCU----UCCUCG-CGCCUCGUGug -5'
23699 5' -59.3 NC_005261.1 + 92140 0.66 0.724715
Target:  5'- cGGGCUGGGccAGGAcCuCGGcgAGCGCGCg -3'
miRNA:   3'- -CUCGACCCu-UCCUcGcGCC--UCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 92696 0.71 0.420238
Target:  5'- cGAGC-GGGAgcGGGAGCG-GGAGCGggaGCg -3'
miRNA:   3'- -CUCGaCCCU--UCCUCGCgCCUCGUg--UG- -5'
23699 5' -59.3 NC_005261.1 + 92726 0.67 0.664413
Target:  5'- gGAGC-GGGAGcGGGGCGgGGAcaGCgaGCGCc -3'
miRNA:   3'- -CUCGaCCCUU-CCUCGCgCCU--CG--UGUG- -5'
23699 5' -59.3 NC_005261.1 + 96845 0.66 0.684711
Target:  5'- aGGCcGGGGucgacgGGGGGCuCGGGGgGCGCg -3'
miRNA:   3'- cUCGaCCCU------UCCUCGcGCCUCgUGUG- -5'
23699 5' -59.3 NC_005261.1 + 97093 0.68 0.572714
Target:  5'- cGGCUGGGccGGGGGCGCcagccGGGC-CGCg -3'
miRNA:   3'- cUCGACCCu-UCCUCGCGc----CUCGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 97595 0.71 0.429074
Target:  5'- gGAGC-GGGc-GGAGCggGCGGAGCGgGCg -3'
miRNA:   3'- -CUCGaCCCuuCCUCG--CGCCUCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 97622 0.71 0.429074
Target:  5'- gGAGC-GGGc-GGAGCggGCGGAGCGgGCg -3'
miRNA:   3'- -CUCGaCCCuuCCUCG--CGCCUCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 97991 0.67 0.644011
Target:  5'- aGAGUgaagUGGGAGGcGGCGgGGGcGCugGCg -3'
miRNA:   3'- -CUCG----ACCCUUCcUCGCgCCU-CGugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.