miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 5' -59.3 NC_005261.1 + 84108 0.66 0.693793
Target:  5'- gGGGCgggaugGGGAGGGGGgcaGCGGGcggggucGCugGCg -3'
miRNA:   3'- -CUCGa-----CCCUUCCUCg--CGCCU-------CGugUG- -5'
23699 5' -59.3 NC_005261.1 + 83862 0.69 0.549619
Target:  5'- uGGGCUGGGccgggccggacgccGGGucagcucuGAGCGCGGGGC-CGCc -3'
miRNA:   3'- -CUCGACCC--------------UUC--------CUCGCGCCUCGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 81487 0.7 0.484271
Target:  5'- aGAGCaGGGccgcGGcuAGCGCGGcGCGCGCg -3'
miRNA:   3'- -CUCGaCCCuu--CC--UCGCGCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 81349 0.7 0.456224
Target:  5'- cGGCgGGGcGGGGGCuuGCGGGGgGCGCc -3'
miRNA:   3'- cUCGaCCCuUCCUCG--CGCCUCgUGUG- -5'
23699 5' -59.3 NC_005261.1 + 81278 0.67 0.644011
Target:  5'- -cGcCUGcGcGAGccGGAGCGCGGcGCGCACg -3'
miRNA:   3'- cuC-GAC-C-CUU--CCUCGCGCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 80066 0.74 0.301863
Target:  5'- cGGGCgcggGGGGcguGGGGGaCGCGGAccgGCGCGCg -3'
miRNA:   3'- -CUCGa---CCCU---UCCUC-GCGCCU---CGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 77223 0.7 0.484271
Target:  5'- uGGCcgggGGGGAGGAGC-CaGAGCGCAg -3'
miRNA:   3'- cUCGa---CCCUUCCUCGcGcCUCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 75835 0.72 0.386023
Target:  5'- -cGCgcccGGGGAGGGGCGCGcGGCGC-Cg -3'
miRNA:   3'- cuCGa---CCCUUCCUCGCGCcUCGUGuG- -5'
23699 5' -59.3 NC_005261.1 + 75576 0.71 0.429074
Target:  5'- -cGCUGGGcGGcGGCGCGGcgcucGCGCGCg -3'
miRNA:   3'- cuCGACCCuUCcUCGCGCCu----CGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 74923 0.69 0.513119
Target:  5'- gGGGgaGGGcGAGGAcggggacugcgGCGCGG-GCGCGCu -3'
miRNA:   3'- -CUCgaCCC-UUCCU-----------CGCGCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 73206 0.66 0.73454
Target:  5'- uGGCcccGGGcgccucGAGGGGCGCGGuGGC-CGCg -3'
miRNA:   3'- cUCGa--CCC------UUCCUCGCGCC-UCGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 72446 0.66 0.703835
Target:  5'- cGGCgGGGGcgcccgcGGcGAGCGCGGcgAGCGCGa -3'
miRNA:   3'- cUCGaCCCU-------UC-CUCGCGCC--UCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 71958 0.76 0.221513
Target:  5'- uGGCgucGGcgcGGGGCGCGGAGCGCGCg -3'
miRNA:   3'- cUCGac-CCuu-CCUCGCGCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 69944 0.67 0.644011
Target:  5'- gGAGCcgGGGAuagcggAGGGGCcucCGG-GCGCGCg -3'
miRNA:   3'- -CUCGa-CCCU------UCCUCGc--GCCuCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 69744 0.7 0.484271
Target:  5'- aGGCggagGaGGAGGcGAGCGCGGGGgGCGg -3'
miRNA:   3'- cUCGa---C-CCUUC-CUCGCGCCUCgUGUg -5'
23699 5' -59.3 NC_005261.1 + 69517 0.68 0.572714
Target:  5'- cGGGCUGccGGAGcuGGCGCGGgcgcuGGCGCGCg -3'
miRNA:   3'- -CUCGAC--CCUUccUCGCGCC-----UCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 68615 0.66 0.714811
Target:  5'- cGGCgugGGGGAGGAuGCGCGcccGCcCGCg -3'
miRNA:   3'- cUCGa--CCCUUCCU-CGCGCcu-CGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 62808 0.69 0.526822
Target:  5'- cGGGCUGGGccauaucgccGCGCGGGGCACcgGCg -3'
miRNA:   3'- -CUCGACCCuuccu-----CGCGCCUCGUG--UG- -5'
23699 5' -59.3 NC_005261.1 + 58875 0.73 0.308895
Target:  5'- -cGCUGGGGAGGuccGgGCGGgccucgcaGGCGCGCg -3'
miRNA:   3'- cuCGACCCUUCCu--CgCGCC--------UCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 58303 0.66 0.723728
Target:  5'- gGGGCgcgGGGAGGGGGCGgcccagcCGcccGAGCAC-Cg -3'
miRNA:   3'- -CUCGa--CCCUUCCUCGC-------GC---CUCGUGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.