miRNA display CGI


Results 41 - 60 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23699 5' -59.3 NC_005261.1 + 24013 0.77 0.172758
Target:  5'- -uGCUaGGGGAGGGG-GCGGAGCGCGg -3'
miRNA:   3'- cuCGA-CCCUUCCUCgCGCCUCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 121796 0.78 0.164234
Target:  5'- cGGGCUGGGcAGGGGGCGCGuGGCugGg -3'
miRNA:   3'- -CUCGACCC-UUCCUCGCGCcUCGugUg -5'
23699 5' -59.3 NC_005261.1 + 137761 0.81 0.092769
Target:  5'- -cGCgGGGgcGGGGUGCGGGGCGCGCc -3'
miRNA:   3'- cuCGaCCCuuCCUCGCGCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 78 0.81 0.092769
Target:  5'- -cGCgGGGgcGGGGUGCGGGGCGCGCc -3'
miRNA:   3'- cuCGaCCCuuCCUCGCGCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 13667 0.84 0.060509
Target:  5'- -cGCcGcGGggGGGGCGCGGGGCGCGCg -3'
miRNA:   3'- cuCGaC-CCuuCCUCGCGCCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 5388 0.73 0.316052
Target:  5'- aGGgaGGGAGGGAGaGCGaGAGCGCGg -3'
miRNA:   3'- cUCgaCCCUUCCUCgCGC-CUCGUGUg -5'
23699 5' -59.3 NC_005261.1 + 138183 0.73 0.316052
Target:  5'- aGAGggGGGGAGG-GCGCGG-GCGgGCg -3'
miRNA:   3'- -CUCgaCCCUUCCuCGCGCCuCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 132519 0.71 0.411513
Target:  5'- cGGGCUGGGAcgAGuacGAGCGCGcccucGCGCGCg -3'
miRNA:   3'- -CUCGACCCU--UC---CUCGCGCcu---CGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 11791 0.71 0.411513
Target:  5'- gGGGCggagggGGGAAGGGGgGCGGAGgGgGa -3'
miRNA:   3'- -CUCGa-----CCCUUCCUCgCGCCUCgUgUg -5'
23699 5' -59.3 NC_005261.1 + 90197 0.71 0.4029
Target:  5'- -cGCaGGGAgcgcGGGGGCgGCGGAGCGCc- -3'
miRNA:   3'- cuCGaCCCU----UCCUCG-CGCCUCGUGug -5'
23699 5' -59.3 NC_005261.1 + 44750 0.71 0.4029
Target:  5'- cGAGCUgcgcgcgacccGGGAGcGGAGCG-GGAGC-CGCa -3'
miRNA:   3'- -CUCGA-----------CCCUU-CCUCGCgCCUCGuGUG- -5'
23699 5' -59.3 NC_005261.1 + 75835 0.72 0.386023
Target:  5'- -cGCgcccGGGGAGGGGCGCGcGGCGC-Cg -3'
miRNA:   3'- cuCGa---CCCUUCCUCGCGCcUCGUGuG- -5'
23699 5' -59.3 NC_005261.1 + 22567 0.72 0.352915
Target:  5'- cGGGgaGGGGAGGGGgagaGCGGcggaggcGGCGCACg -3'
miRNA:   3'- -CUCgaCCCUUCCUCg---CGCC-------UCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 48179 0.73 0.345921
Target:  5'- gGGGUggacggGGGAAGGgcaaacagGGCGCGGgccGGCGCGCg -3'
miRNA:   3'- -CUCGa-----CCCUUCC--------UCGCGCC---UCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 137839 0.73 0.345921
Target:  5'- aGGGCUGGc--GGAGUugGCGGGGCugGCg -3'
miRNA:   3'- -CUCGACCcuuCCUCG--CGCCUCGugUG- -5'
23699 5' -59.3 NC_005261.1 + 11383 0.73 0.345921
Target:  5'- -uGgaGGGAGGGAGUGUGG-GCGgGCg -3'
miRNA:   3'- cuCgaCCCUUCCUCGCGCCuCGUgUG- -5'
23699 5' -59.3 NC_005261.1 + 156 0.73 0.345921
Target:  5'- aGGGCUGGc--GGAGUugGCGGGGCugGCg -3'
miRNA:   3'- -CUCGACCcuuCCUCG--CGCCUCGugUG- -5'
23699 5' -59.3 NC_005261.1 + 98707 0.73 0.338268
Target:  5'- gGAGCUGGGGccGGGGUccgGCcuugGGGGCACGCg -3'
miRNA:   3'- -CUCGACCCUu-CCUCG---CG----CCUCGUGUG- -5'
23699 5' -59.3 NC_005261.1 + 32932 0.73 0.330739
Target:  5'- cGGGCgGGGggGGGGCGgGGAGgGgAg -3'
miRNA:   3'- -CUCGaCCCuuCCUCGCgCCUCgUgUg -5'
23699 5' -59.3 NC_005261.1 + 57191 0.73 0.323333
Target:  5'- cGGC-GGGAAgGGGGgGgGGGGCGCGCg -3'
miRNA:   3'- cUCGaCCCUU-CCUCgCgCCUCGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.