Results 101 - 110 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 92696 | 0.71 | 0.420238 |
Target: 5'- cGAGC-GGGAgcGGGAGCG-GGAGCGggaGCg -3' miRNA: 3'- -CUCGaCCCU--UCCUCGCgCCUCGUg--UG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 75576 | 0.71 | 0.429074 |
Target: 5'- -cGCUGGGcGGcGGCGCGGcgcucGCGCGCg -3' miRNA: 3'- cuCGACCCuUCcUCGCGCCu----CGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 97595 | 0.71 | 0.429074 |
Target: 5'- gGAGC-GGGc-GGAGCggGCGGAGCGgGCg -3' miRNA: 3'- -CUCGaCCCuuCCUCG--CGCCUCGUgUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 97622 | 0.71 | 0.429074 |
Target: 5'- gGAGC-GGGc-GGAGCggGCGGAGCGgGCg -3' miRNA: 3'- -CUCGaCCCuuCCUCG--CGCCUCGUgUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 11826 | 0.71 | 0.438019 |
Target: 5'- aGAGUggGGGcGGGGGCcccGCGG-GCGCGCg -3' miRNA: 3'- -CUCGa-CCCuUCCUCG---CGCCuCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 118671 | 0.7 | 0.44707 |
Target: 5'- gGGGCUGaGGgcGGcgGGCGCuGGcGCACGCg -3' miRNA: 3'- -CUCGAC-CCuuCC--UCGCG-CCuCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 127334 | 0.7 | 0.44707 |
Target: 5'- -cGCggGGGccGGAGCgGCGGGGCGCu- -3' miRNA: 3'- cuCGa-CCCuuCCUCG-CGCCUCGUGug -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 136555 | 0.7 | 0.456224 |
Target: 5'- cAGCUGGuGggGGcagaaGGCGCGGgugGGCGgGCg -3' miRNA: 3'- cUCGACC-CuuCC-----UCGCGCC---UCGUgUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 81349 | 0.7 | 0.456224 |
Target: 5'- cGGCgGGGcGGGGGCuuGCGGGGgGCGCc -3' miRNA: 3'- cUCGaCCCuUCCUCG--CGCCUCgUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 83862 | 0.69 | 0.549619 |
Target: 5'- uGGGCUGGGccgggccggacgccGGGucagcucuGAGCGCGGGGC-CGCc -3' miRNA: 3'- -CUCGACCC--------------UUC--------CUCGCGCCUCGuGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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