Results 81 - 100 of 110 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23699 | 5' | -59.3 | NC_005261.1 | + | 41909 | 0.7 | 0.484271 |
Target: 5'- gGGGUUGGGAuaaggcaggugAGGAcauucuCGCuGGAGCGCACg -3' miRNA: 3'- -CUCGACCCU-----------UCCUc-----GCG-CCUCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 69744 | 0.7 | 0.484271 |
Target: 5'- aGGCggagGaGGAGGcGAGCGCGGGGgGCGg -3' miRNA: 3'- cUCGa---C-CCUUC-CUCGCGCCUCgUGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 32081 | 0.7 | 0.484271 |
Target: 5'- -cGCUGGGGcucgGGGAGCcggacuucGCGGAGgGCGa -3' miRNA: 3'- cuCGACCCU----UCCUCG--------CGCCUCgUGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 81487 | 0.7 | 0.484271 |
Target: 5'- aGAGCaGGGccgcGGcuAGCGCGGcGCGCGCg -3' miRNA: 3'- -CUCGaCCCuu--CC--UCGCGCCuCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 26315 | 0.7 | 0.493804 |
Target: 5'- aGAGgUGGGAAGGgagauAGUGagaGGGGCGCGg -3' miRNA: 3'- -CUCgACCCUUCC-----UCGCg--CCUCGUGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 119280 | 0.69 | 0.503421 |
Target: 5'- -cGCUGGGcGGGGGCucgccgaggaaGCGGAGgGCGa -3' miRNA: 3'- cuCGACCCuUCCUCG-----------CGCCUCgUGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 74923 | 0.69 | 0.513119 |
Target: 5'- gGGGgaGGGcGAGGAcggggacugcgGCGCGG-GCGCGCu -3' miRNA: 3'- -CUCgaCCC-UUCCU-----------CGCGCCuCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 136555 | 0.7 | 0.456224 |
Target: 5'- cAGCUGGuGggGGcagaaGGCGCGGgugGGCGgGCg -3' miRNA: 3'- cUCGACC-CuuCC-----UCGCGCC---UCGUgUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 127334 | 0.7 | 0.44707 |
Target: 5'- -cGCggGGGccGGAGCgGCGGGGCGCu- -3' miRNA: 3'- cuCGa-CCCuuCCUCG-CGCCUCGUGug -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 118671 | 0.7 | 0.44707 |
Target: 5'- gGGGCUGaGGgcGGcgGGCGCuGGcGCACGCg -3' miRNA: 3'- -CUCGAC-CCuuCC--UCGCG-CCuCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 90197 | 0.71 | 0.4029 |
Target: 5'- -cGCaGGGAgcgcGGGGGCgGCGGAGCGCc- -3' miRNA: 3'- cuCGaCCCU----UCCUCG-CGCCUCGUGug -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 11791 | 0.71 | 0.411513 |
Target: 5'- gGGGCggagggGGGAAGGGGgGCGGAGgGgGa -3' miRNA: 3'- -CUCGa-----CCCUUCCUCgCGCCUCgUgUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 132519 | 0.71 | 0.411513 |
Target: 5'- cGGGCUGGGAcgAGuacGAGCGCGcccucGCGCGCg -3' miRNA: 3'- -CUCGACCCU--UC---CUCGCGCcu---CGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 32902 | 0.71 | 0.420238 |
Target: 5'- cGGgaGGGAAGGGGCGCgcguGGGGgGCGg -3' miRNA: 3'- cUCgaCCCUUCCUCGCG----CCUCgUGUg -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 134180 | 0.71 | 0.420238 |
Target: 5'- -cGCUGcuugcGGAGGGccuGGCGCGGcucGGCGCGCg -3' miRNA: 3'- cuCGAC-----CCUUCC---UCGCGCC---UCGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 92696 | 0.71 | 0.420238 |
Target: 5'- cGAGC-GGGAgcGGGAGCG-GGAGCGggaGCg -3' miRNA: 3'- -CUCGaCCCU--UCCUCGCgCCUCGUg--UG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 75576 | 0.71 | 0.429074 |
Target: 5'- -cGCUGGGcGGcGGCGCGGcgcucGCGCGCg -3' miRNA: 3'- cuCGACCCuUCcUCGCGCCu----CGUGUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 97595 | 0.71 | 0.429074 |
Target: 5'- gGAGC-GGGc-GGAGCggGCGGAGCGgGCg -3' miRNA: 3'- -CUCGaCCCuuCCUCG--CGCCUCGUgUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 97622 | 0.71 | 0.429074 |
Target: 5'- gGAGC-GGGc-GGAGCggGCGGAGCGgGCg -3' miRNA: 3'- -CUCGaCCCuuCCUCG--CGCCUCGUgUG- -5' |
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23699 | 5' | -59.3 | NC_005261.1 | + | 11826 | 0.71 | 0.438019 |
Target: 5'- aGAGUggGGGcGGGGGCcccGCGG-GCGCGCg -3' miRNA: 3'- -CUCGa-CCCuUCCUCG---CGCCuCGUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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