miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2370 3' -64.1 NC_001416.1 + 16953 0.67 0.230629
Target:  5'- aUCAGCacCGGugGCGuGUGCUGgcggugaaCAGCCa -3'
miRNA:   3'- -AGUCG--GCCugCGCcCGCGAC--------GUCGGc -5'
2370 3' -64.1 NC_001416.1 + 7571 0.67 0.218783
Target:  5'- gCGGCCuGGccagaaugcaauaACGgGaGGCGCUGUGGCUGa -3'
miRNA:   3'- aGUCGG-CC-------------UGCgC-CCGCGACGUCGGC- -5'
2370 3' -64.1 NC_001416.1 + 5438 0.69 0.165392
Target:  5'- gCAGCCGGACGUGaacGCGCagaucaccGCAGCgGu -3'
miRNA:   3'- aGUCGGCCUGCGCc--CGCGa-------CGUCGgC- -5'
2370 3' -64.1 NC_001416.1 + 4335 0.69 0.156143
Target:  5'- gCAGCCGGucuuaaaccgccCGCcuGGGCgGCUGCAGCa- -3'
miRNA:   3'- aGUCGGCCu-----------GCG--CCCG-CGACGUCGgc -5'
2370 3' -64.1 NC_001416.1 + 16883 0.69 0.152897
Target:  5'- aCAGCCcGGCGCGGuGUGCcUGCccccGGCUGg -3'
miRNA:   3'- aGUCGGcCUGCGCC-CGCG-ACG----UCGGC- -5'
2370 3' -64.1 NC_001416.1 + 14627 0.7 0.141264
Target:  5'- aCAGCCGGGCGau-GUGCUGCuguGCUGu -3'
miRNA:   3'- aGUCGGCCUGCgccCGCGACGu--CGGC- -5'
2370 3' -64.1 NC_001416.1 + 32609 0.7 0.13757
Target:  5'- aUCGuuCCGGugGUGGGCGUUGaUGGCUGg -3'
miRNA:   3'- -AGUc-GGCCugCGCCCGCGAC-GUCGGC- -5'
2370 3' -64.1 NC_001416.1 + 16804 0.71 0.117212
Target:  5'- cCAGCCGGGgGCaGGCacaccgcgccggGCUGUGGCUGa -3'
miRNA:   3'- aGUCGGCCUgCGcCCG------------CGACGUCGGC- -5'
2370 3' -64.1 NC_001416.1 + 5870 0.72 0.10243
Target:  5'- aUCcGCCGGGCGCGGuuGCgGUaugAGCCGg -3'
miRNA:   3'- -AGuCGGCCUGCGCCcgCGaCG---UCGGC- -5'
2370 3' -64.1 NC_001416.1 + 3855 0.77 0.043563
Target:  5'- cCAGCCGGAC-C-GGCGCUGCGGCg- -3'
miRNA:   3'- aGUCGGCCUGcGcCCGCGACGUCGgc -5'
2370 3' -64.1 NC_001416.1 + 4687 1.08 0.000151
Target:  5'- gUCAGCCGGACGCGGGCGCUGCAGCCGu -3'
miRNA:   3'- -AGUCGGCCUGCGCCCGCGACGUCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.