miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2370 5' -52 NC_001416.1 + 2896 0.66 0.865408
Target:  5'- uGCCGGUUAUcACGGCG--GUgGCagCGg -3'
miRNA:   3'- -UGGCCAAUGuUGCCGUaaUAgCGg-GC- -5'
2370 5' -52 NC_001416.1 + 17012 0.67 0.824563
Target:  5'- cACCGGUgcugAUAcCGGCAUagucaucaucgcagaUuucaauaacAUCGCCCGg -3'
miRNA:   3'- -UGGCCAa---UGUuGCCGUA---------------A---------UAGCGGGC- -5'
2370 5' -52 NC_001416.1 + 13960 0.67 0.791406
Target:  5'- -gCGGUUAUAGCGGCcggcUGUCGCg-- -3'
miRNA:   3'- ugGCCAAUGUUGCCGua--AUAGCGggc -5'
2370 5' -52 NC_001416.1 + 5494 0.69 0.706226
Target:  5'- uCCGGcUGCGccgcGCuGGCGUUcUCGCCCu -3'
miRNA:   3'- uGGCCaAUGU----UG-CCGUAAuAGCGGGc -5'
2370 5' -52 NC_001416.1 + 4779 0.69 0.683912
Target:  5'- aACCGGUcauccccgagUACGGCuGCAg---CGCCCGc -3'
miRNA:   3'- -UGGCCA----------AUGUUGcCGUaauaGCGGGC- -5'
2370 5' -52 NC_001416.1 + 5867 0.7 0.616084
Target:  5'- cGCCGGgcGCGguuGCGGUAUgagccgggucacUGUUGCCCu -3'
miRNA:   3'- -UGGCCaaUGU---UGCCGUA------------AUAGCGGGc -5'
2370 5' -52 NC_001416.1 + 17586 0.71 0.569891
Target:  5'- cGCCaGUUGCGugaaGCGGUAUUgguuuccGUCGUCCGg -3'
miRNA:   3'- -UGGcCAAUGU----UGCCGUAA-------UAGCGGGC- -5'
2370 5' -52 NC_001416.1 + 4725 1.09 0.002015
Target:  5'- gACCGGUUACAACGGCAUUAUCGCCCGu -3'
miRNA:   3'- -UGGCCAAUGUUGCCGUAAUAGCGGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.