Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2370 | 5' | -52 | NC_001416.1 | + | 2896 | 0.66 | 0.865408 |
Target: 5'- uGCCGGUUAUcACGGCG--GUgGCagCGg -3' miRNA: 3'- -UGGCCAAUGuUGCCGUaaUAgCGg-GC- -5' |
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2370 | 5' | -52 | NC_001416.1 | + | 17012 | 0.67 | 0.824563 |
Target: 5'- cACCGGUgcugAUAcCGGCAUagucaucaucgcagaUuucaauaacAUCGCCCGg -3' miRNA: 3'- -UGGCCAa---UGUuGCCGUA---------------A---------UAGCGGGC- -5' |
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2370 | 5' | -52 | NC_001416.1 | + | 13960 | 0.67 | 0.791406 |
Target: 5'- -gCGGUUAUAGCGGCcggcUGUCGCg-- -3' miRNA: 3'- ugGCCAAUGUUGCCGua--AUAGCGggc -5' |
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2370 | 5' | -52 | NC_001416.1 | + | 5494 | 0.69 | 0.706226 |
Target: 5'- uCCGGcUGCGccgcGCuGGCGUUcUCGCCCu -3' miRNA: 3'- uGGCCaAUGU----UG-CCGUAAuAGCGGGc -5' |
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2370 | 5' | -52 | NC_001416.1 | + | 4779 | 0.69 | 0.683912 |
Target: 5'- aACCGGUcauccccgagUACGGCuGCAg---CGCCCGc -3' miRNA: 3'- -UGGCCA----------AUGUUGcCGUaauaGCGGGC- -5' |
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2370 | 5' | -52 | NC_001416.1 | + | 5867 | 0.7 | 0.616084 |
Target: 5'- cGCCGGgcGCGguuGCGGUAUgagccgggucacUGUUGCCCu -3' miRNA: 3'- -UGGCCaaUGU---UGCCGUA------------AUAGCGGGc -5' |
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2370 | 5' | -52 | NC_001416.1 | + | 17586 | 0.71 | 0.569891 |
Target: 5'- cGCCaGUUGCGugaaGCGGUAUUgguuuccGUCGUCCGg -3' miRNA: 3'- -UGGcCAAUGU----UGCCGUAA-------UAGCGGGC- -5' |
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2370 | 5' | -52 | NC_001416.1 | + | 4725 | 1.09 | 0.002015 |
Target: 5'- gACCGGUUACAACGGCAUUAUCGCCCGu -3' miRNA: 3'- -UGGCCAAUGUUGCCGUAAUAGCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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