Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23700 | 3' | -46.2 | NC_005261.1 | + | 99941 | 0.7 | 0.995073 |
Target: 5'- uCCAGCGUcUUGCACAuguACUCGu--- -3' miRNA: 3'- cGGUCGCA-AGCGUGUuu-UGAGUuauu -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 79734 | 0.69 | 0.996471 |
Target: 5'- cGCCgGGCGcgCGCAuCGAGuuCUCGAUGAa -3' miRNA: 3'- -CGG-UCGCaaGCGU-GUUUu-GAGUUAUU- -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 113243 | 0.69 | 0.996471 |
Target: 5'- cGCgCAGCaaGUUCGCGCGcGGGCUCAu--- -3' miRNA: 3'- -CG-GUCG--CAAGCGUGU-UUUGAGUuauu -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 57684 | 0.69 | 0.997037 |
Target: 5'- aGCCGGCGgg-GCACAGGGC-CAGc-- -3' miRNA: 3'- -CGGUCGCaagCGUGUUUUGaGUUauu -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 3800 | 0.69 | 0.997525 |
Target: 5'- cGCCAGC--UCGCGCAGccGCUCGc--- -3' miRNA: 3'- -CGGUCGcaAGCGUGUUu-UGAGUuauu -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 107617 | 0.69 | 0.997525 |
Target: 5'- gGCaCAGCGUccgUGCGCGgGAACUCGAg-- -3' miRNA: 3'- -CG-GUCGCAa--GCGUGU-UUUGAGUUauu -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 19279 | 0.69 | 0.997944 |
Target: 5'- cGCCAGCGUcUCGUACGcGACg------ -3' miRNA: 3'- -CGGUCGCA-AGCGUGUuUUGaguuauu -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 3871 | 0.69 | 0.997944 |
Target: 5'- gGCCGGCGagcacggCGCGCA--GCUCGGc-- -3' miRNA: 3'- -CGGUCGCaa-----GCGUGUuuUGAGUUauu -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 98325 | 0.69 | 0.997944 |
Target: 5'- cGCCAGCGgcggCGCGCcccGugUCGAc-- -3' miRNA: 3'- -CGGUCGCaa--GCGUGuu-UugAGUUauu -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 1897 | 0.68 | 0.998606 |
Target: 5'- cGCCAGCG--CGCGCc--GCUCAGg-- -3' miRNA: 3'- -CGGUCGCaaGCGUGuuuUGAGUUauu -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 54020 | 0.68 | 0.998606 |
Target: 5'- cGCgAGCGcUUCGCGCAcgcGCUCcGUGu -3' miRNA: 3'- -CGgUCGC-AAGCGUGUuu-UGAGuUAUu -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 68536 | 0.68 | 0.999058 |
Target: 5'- cGCCGGCGccCGCGCGcccccugcugcgcGGGCUCuuUGAg -3' miRNA: 3'- -CGGUCGCaaGCGUGU-------------UUUGAGuuAUU- -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 85892 | 0.67 | 0.999257 |
Target: 5'- aCCAGCccgCGCACGAAcgcCUCGGUGg -3' miRNA: 3'- cGGUCGcaaGCGUGUUUu--GAGUUAUu -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 19377 | 0.67 | 0.999406 |
Target: 5'- uGCCAGCcaggcCGUaguaGCGGGGCUCGGUGAu -3' miRNA: 3'- -CGGUCGcaa--GCG----UGUUUUGAGUUAUU- -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 71497 | 0.67 | 0.999528 |
Target: 5'- gGCCAG-GUgCGCGCGAAAgUCGGc-- -3' miRNA: 3'- -CGGUCgCAaGCGUGUUUUgAGUUauu -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 12321 | 0.67 | 0.999528 |
Target: 5'- aGCCGGCGggCGCGC---GCUUGGc-- -3' miRNA: 3'- -CGGUCGCaaGCGUGuuuUGAGUUauu -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 119653 | 0.67 | 0.999627 |
Target: 5'- aCCGGCGgcgCGCGCcuGGAGCUCu---- -3' miRNA: 3'- cGGUCGCaa-GCGUG--UUUUGAGuuauu -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 28592 | 0.67 | 0.999708 |
Target: 5'- cGCCGGCGggccgccCGCGCcGAGCUgGcgGAg -3' miRNA: 3'- -CGGUCGCaa-----GCGUGuUUUGAgUuaUU- -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 22828 | 0.67 | 0.999708 |
Target: 5'- cGCCGcCGUUgGCGCcGGGCUCGGg-- -3' miRNA: 3'- -CGGUcGCAAgCGUGuUUUGAGUUauu -5' |
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23700 | 3' | -46.2 | NC_005261.1 | + | 103824 | 0.66 | 0.999773 |
Target: 5'- cGCCAGCaGcUCGCGgaGGAGCUCGc--- -3' miRNA: 3'- -CGGUCG-CaAGCGUg-UUUUGAGUuauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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