miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23700	5'	-44.1	NC_005261.1	+	36448	0.69	0.999566
	Target:  5'- ------aGAGCUAAGUGCaGAGcgUCUGa -3' miRNA:   3'- auaauaaCUCGGUUCACG-CUUa-AGAC- -5'
23700	5'	-44.1	NC_005261.1	+	128125	0.7	0.999134
	Target:  5'- ------cGGGCCGAGUGCGGAg---- -3' miRNA:   3'- auaauaaCUCGGUUCACGCUUaagac -5'
23700	5'	-44.1	NC_005261.1	+	24999	0.73	0.992208
	Target:  5'- -cUUAUUGAGUUuuGUGCGAAcgCUGg -3' miRNA:   3'- auAAUAACUCGGuuCACGCUUaaGAC- -5'
23700	5'	-44.1	NC_005261.1	+	25115	0.73	0.992208
	Target:  5'- -cUUAUUGAGUUuuGUGCGAAcgCUGg -3' miRNA:   3'- auAAUAACUCGGuuCACGCUUaaGAC- -5'
23700	5'	-44.1	NC_005261.1	+	8948	0.75	0.971466
	Target:  5'- -cUUAUUGAGCUcuGUGCGAAcaCUGg -3' miRNA:   3'- auAAUAACUCGGuuCACGCUUaaGAC- -5'
23700	5'	-44.1	NC_005261.1	+	24811	0.79	0.860446
	Target:  5'- aAUUAUUGAGCUuuGUGCGAAcaCUGg -3' miRNA:   3'- aUAAUAACUCGGuuCACGCUUaaGAC- -5'
23700	5'	-44.1	NC_005261.1	+	8631	1.1	0.029998
	Target:  5'- aUAUUAUUGAGCCAAGUGCGAAUUCUGg -3' miRNA:   3'- -AUAAUAACUCGGUUCACGCUUAAGAC- -5'
23700	5'	-44.1	NC_005261.1	+	8745	1.1	0.029998
	Target:  5'- aUAUUAUUGAGCCAAGUGCGAAUUCUGg -3' miRNA:   3'- -AUAAUAACUCGGUUCACGCUUAAGAC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home