miRNA display CGI


Results 21 - 40 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23702 3' -60.5 NC_005261.1 + 48142 0.69 0.512169
Target:  5'- aGAGGGGGGAGGGu--GGcGaGAGaGAGCGg -3'
miRNA:   3'- -CUCCUCUCUCCCucuCC-C-CUC-CUCGU- -5'
23702 3' -60.5 NC_005261.1 + 97986 0.69 0.493136
Target:  5'- cGGGGAGAGugaaguGGGAGGcGGcGGGGGcGCu -3'
miRNA:   3'- -CUCCUCUCu-----CCCUCU-CC-CCUCCuCGu -5'
23702 3' -60.5 NC_005261.1 + 92696 0.69 0.493136
Target:  5'- cGAGcGGGAGcGGGAGcGGGaGcGGGAGCGg -3'
miRNA:   3'- -CUC-CUCUCuCCCUCuCCC-C-UCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 35244 0.7 0.4206
Target:  5'- gGAGGAGAGGcGGcGGGAuGGGAGGcAGUg -3'
miRNA:   3'- -CUCCUCUCU-CC-CUCUcCCCUCC-UCGu -5'
23702 3' -60.5 NC_005261.1 + 87882 0.7 0.411991
Target:  5'- -cGGAGAGAGgcgcGGAGAGGGcGGGccGGGCGu -3'
miRNA:   3'- cuCCUCUCUC----CCUCUCCC-CUC--CUCGU- -5'
23702 3' -60.5 NC_005261.1 + 129500 0.7 0.411991
Target:  5'- aGGGGGGGAGGGGGAaGGGaAGGAa-- -3'
miRNA:   3'- cUCCUCUCUCCCUCUcCCC-UCCUcgu -5'
23702 3' -60.5 NC_005261.1 + 35177 0.71 0.403491
Target:  5'- cGAGcgcaGAGaAGAGGG-GAGaGGAGGAGCAg -3'
miRNA:   3'- -CUC----CUC-UCUCCCuCUCcCCUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 27211 0.71 0.386828
Target:  5'- gGAGGGGGGgaaAGGGGGAagggugaagGGGGAGGcGCc -3'
miRNA:   3'- -CUCCUCUC---UCCCUCU---------CCCCUCCuCGu -5'
23702 3' -60.5 NC_005261.1 + 11383 0.71 0.370626
Target:  5'- -uGGAGGGAGGGAGuguGGGcGGGcGCGg -3'
miRNA:   3'- cuCCUCUCUCCCUCu--CCCcUCCuCGU- -5'
23702 3' -60.5 NC_005261.1 + 88312 0.71 0.3627
Target:  5'- -cGaAGAGGGGGAG-GGGGAGGcuGCAa -3'
miRNA:   3'- cuCcUCUCUCCCUCuCCCCUCCu-CGU- -5'
23702 3' -60.5 NC_005261.1 + 137395 0.72 0.354893
Target:  5'- nGAGG-GAGGaGGAGcGaGGGAGGAGCGa -3'
miRNA:   3'- -CUCCuCUCUcCCUCuC-CCCUCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 78440 0.72 0.347205
Target:  5'- uGGGGAGAaggcgGGGGGuuuGAGGGGgaugguGGGGGCGa -3'
miRNA:   3'- -CUCCUCU-----CUCCCu--CUCCCC------UCCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 90140 0.72 0.347205
Target:  5'- cGAGGAGGGGGGcGAu-GGGGAGGAu-- -3'
miRNA:   3'- -CUCCUCUCUCC-CUcuCCCCUCCUcgu -5'
23702 3' -60.5 NC_005261.1 + 30812 0.72 0.339637
Target:  5'- gGAGGAGcuGGGGGGGcccGGGGAcGGGGCc -3'
miRNA:   3'- -CUCCUCu-CUCCCUCu--CCCCU-CCUCGu -5'
23702 3' -60.5 NC_005261.1 + 5645 0.72 0.317656
Target:  5'- uAGGGGGGGGGGcgggcaacgaGGAGGGaGAGGGGgAg -3'
miRNA:   3'- cUCCUCUCUCCC----------UCUCCC-CUCCUCgU- -5'
23702 3' -60.5 NC_005261.1 + 22119 0.73 0.31339
Target:  5'- -cGGAGAGugcgugcgguauacgGcGGGGGGGGGGAaGGGGCAu -3'
miRNA:   3'- cuCCUCUC---------------U-CCCUCUCCCCU-CCUCGU- -5'
23702 3' -60.5 NC_005261.1 + 84106 0.73 0.31057
Target:  5'- cGGGGGcGGGAugGGGAGGGGGGcAGcGGGCGg -3'
miRNA:   3'- -CUCCU-CUCU--CCCUCUCCCC-UC-CUCGU- -5'
23702 3' -60.5 NC_005261.1 + 7293 0.73 0.303606
Target:  5'- cAGGGcAGAGGGAGAGaaGGGGGGAGa- -3'
miRNA:   3'- cUCCUcUCUCCCUCUC--CCCUCCUCgu -5'
23702 3' -60.5 NC_005261.1 + 30458 0.73 0.283435
Target:  5'- cGAGGAcGGGGGGGAcGGGGGGgacgAGGAGg- -3'
miRNA:   3'- -CUCCU-CUCUCCCU-CUCCCC----UCCUCgu -5'
23702 3' -60.5 NC_005261.1 + 39717 0.73 0.276952
Target:  5'- cAGGGGAGGGGGuuuGGGGGGcGGGuGCc -3'
miRNA:   3'- cUCCUCUCUCCCu--CUCCCC-UCCuCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.