Results 1 - 20 of 487 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23703 | 5' | -60 | NC_005261.1 | + | 112688 | 0.66 | 0.735793 |
Target: 5'- ---gGGCUggGCGUcgAGGCCguGCC-CGUGCa -3' miRNA: 3'- aguaCCGG--UGCG--UCCGG--CGGuGCACG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 106558 | 0.78 | 0.149665 |
Target: 5'- gUCcgGGCCgGCGCgcgccggccccgGGGCCGCCGCGcgGCg -3' miRNA: 3'- -AGuaCCGG-UGCG------------UCCGGCGGUGCa-CG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 65537 | 0.78 | 0.16545 |
Target: 5'- ---cGGCCGCGCGGGCaGCagCGCGUGCc -3' miRNA: 3'- aguaCCGGUGCGUCCGgCG--GUGCACG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 4300 | 0.77 | 0.173891 |
Target: 5'- ---gGGCCcCGC-GGCCGCCGCGUaGCg -3' miRNA: 3'- aguaCCGGuGCGuCCGGCGGUGCA-CG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 44981 | 0.77 | 0.173891 |
Target: 5'- ---gGGcCCGgGCGGGCCGCCACagGUGCu -3' miRNA: 3'- aguaCC-GGUgCGUCCGGCGGUG--CACG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 12338 | 0.77 | 0.178254 |
Target: 5'- --uUGGCCgGCGCGGccGCCGCCGCGgcgGCa -3' miRNA: 3'- aguACCGG-UGCGUC--CGGCGGUGCa--CG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 29663 | 0.77 | 0.181365 |
Target: 5'- cCAUGGCCGCGCAGaacgcgcugugggcGCUGCCgcACGUGg -3' miRNA: 3'- aGUACCGGUGCGUC--------------CGGCGG--UGCACg -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 39874 | 0.77 | 0.196689 |
Target: 5'- aCAcGGCCA-GCAGGCCGCgCGCGcgGCu -3' miRNA: 3'- aGUaCCGGUgCGUCCGGCG-GUGCa-CG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 39974 | 0.76 | 0.201551 |
Target: 5'- cUCAgcgGGUUGCGCGcGCCGCCGgCGUGCg -3' miRNA: 3'- -AGUa--CCGGUGCGUcCGGCGGU-GCACG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 38942 | 0.79 | 0.135262 |
Target: 5'- ---cGGCCGgGCGGGCCGCgGCGcGCg -3' miRNA: 3'- aguaCCGGUgCGUCCGGCGgUGCaCG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 107309 | 0.79 | 0.128549 |
Target: 5'- ---cGGCCAC---GGCCGCCGCGUGCa -3' miRNA: 3'- aguaCCGGUGcguCCGGCGGUGCACG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 101127 | 0.79 | 0.128549 |
Target: 5'- cUCGUGGUCcucGCGCgAGGCUGCCGCGcgGCg -3' miRNA: 3'- -AGUACCGG---UGCG-UCCGGCGGUGCa-CG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 46676 | 0.82 | 0.082814 |
Target: 5'- --uUGGCCGCGCGcuccacggcGGCCGCCACG-GCa -3' miRNA: 3'- aguACCGGUGCGU---------CCGGCGGUGCaCG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 121813 | 0.82 | 0.087259 |
Target: 5'- gCGUGGCUGggcucUGCGGGCCGCCGCGgcgGCg -3' miRNA: 3'- aGUACCGGU-----GCGUCCGGCGGUGCa--CG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 75481 | 0.82 | 0.089566 |
Target: 5'- ---cGGCgGCGCGGGCCGCUACGaGCg -3' miRNA: 3'- aguaCCGgUGCGUCCGGCGGUGCaCG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 3448 | 0.81 | 0.09684 |
Target: 5'- ---cGGgCGCGCGGGCCGCCGCGccGCg -3' miRNA: 3'- aguaCCgGUGCGUCCGGCGGUGCa-CG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 54082 | 0.81 | 0.107409 |
Target: 5'- ---aGGCCGCGCGGaCCGCCACGUuGCc -3' miRNA: 3'- aguaCCGGUGCGUCcGGCGGUGCA-CG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 68992 | 0.81 | 0.107409 |
Target: 5'- uUUcgGGCCGCGCGGG-CGCCGCG-GCu -3' miRNA: 3'- -AGuaCCGGUGCGUCCgGCGGUGCaCG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 54993 | 0.8 | 0.122144 |
Target: 5'- ---cGGCCACGCcGGCgGCCuCGUGCa -3' miRNA: 3'- aguaCCGGUGCGuCCGgCGGuGCACG- -5' |
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23703 | 5' | -60 | NC_005261.1 | + | 63741 | 0.8 | 0.125309 |
Target: 5'- gCAUGGCCgcggcgGCGUAGGCCGCCGUGUaGCc -3' miRNA: 3'- aGUACCGG------UGCGUCCGGCGGUGCA-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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