miRNA display CGI


Results 21 - 40 of 487 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23703 5' -60 NC_005261.1 + 49527 0.66 0.726135
Target:  5'- gUCGcgGGCCAgccgccgucCGC-GGCCaCCACGUGg -3'
miRNA:   3'- -AGUa-CCGGU---------GCGuCCGGcGGUGCACg -5'
23703 5' -60 NC_005261.1 + 47920 0.66 0.726135
Target:  5'- -----aCCGCGC-GGCCGUCACGUcccGCg -3'
miRNA:   3'- aguaccGGUGCGuCCGGCGGUGCA---CG- -5'
23703 5' -60 NC_005261.1 + 63443 0.66 0.726135
Target:  5'- gCGUaGGCCGCGCccGCCGagcgcCCGCGaggguUGCa -3'
miRNA:   3'- aGUA-CCGGUGCGucCGGC-----GGUGC-----ACG- -5'
23703 5' -60 NC_005261.1 + 30235 0.66 0.725165
Target:  5'- cCGUGGCCcCGCuGGCgcgguacucgacgCGCgGCGcgGCg -3'
miRNA:   3'- aGUACCGGuGCGuCCG-------------GCGgUGCa-CG- -5'
23703 5' -60 NC_005261.1 + 95640 0.66 0.725165
Target:  5'- ---cGGCUgggcgagcgcgacGCGCGGcGCCGCgACGgGCg -3'
miRNA:   3'- aguaCCGG-------------UGCGUC-CGGCGgUGCaCG- -5'
23703 5' -60 NC_005261.1 + 66944 0.66 0.725165
Target:  5'- ---cGGCCGCGUacAGGCCGUugucguccgaccgCACcUGCu -3'
miRNA:   3'- aguaCCGGUGCG--UCCGGCG-------------GUGcACG- -5'
23703 5' -60 NC_005261.1 + 83590 0.66 0.725165
Target:  5'- ---cGGCCGCcaGCAGcgcgucgcucuccGCCGCgGCGUGg -3'
miRNA:   3'- aguaCCGGUG--CGUC-------------CGGCGgUGCACg -5'
23703 5' -60 NC_005261.1 + 107672 0.66 0.7164
Target:  5'- ---cGGCCcCGcCGGgcguuGCCGCCGCG-GCg -3'
miRNA:   3'- aguaCCGGuGC-GUC-----CGGCGGUGCaCG- -5'
23703 5' -60 NC_005261.1 + 34572 0.66 0.7164
Target:  5'- -gAUGGCgAUGCuGGCCGa---GUGCg -3'
miRNA:   3'- agUACCGgUGCGuCCGGCggugCACG- -5'
23703 5' -60 NC_005261.1 + 41137 0.66 0.7164
Target:  5'- gCGUGGCgCGCGCcaGCCGCCGguagGCu -3'
miRNA:   3'- aGUACCG-GUGCGucCGGCGGUgca-CG- -5'
23703 5' -60 NC_005261.1 + 66275 0.66 0.7164
Target:  5'- aCcgGGCgCcCGC-GGCUGUCGCaGUGCg -3'
miRNA:   3'- aGuaCCG-GuGCGuCCGGCGGUG-CACG- -5'
23703 5' -60 NC_005261.1 + 89771 0.66 0.7164
Target:  5'- cCGUGGCCGaGgAGGCC-CUGCGggaGCg -3'
miRNA:   3'- aGUACCGGUgCgUCCGGcGGUGCa--CG- -5'
23703 5' -60 NC_005261.1 + 135342 0.66 0.7164
Target:  5'- --uUGGCCcggagcgguuCGCccccgaGGGCCGCCGCGUc- -3'
miRNA:   3'- aguACCGGu---------GCG------UCCGGCGGUGCAcg -5'
23703 5' -60 NC_005261.1 + 64598 0.66 0.7164
Target:  5'- cCAU-GCUGCaGCA-GCCGCCGCGcGCg -3'
miRNA:   3'- aGUAcCGGUG-CGUcCGGCGGUGCaCG- -5'
23703 5' -60 NC_005261.1 + 133241 0.66 0.7164
Target:  5'- aCAUGGCgGagcacuaccCGCAGGCgGCgCGCGaGUa -3'
miRNA:   3'- aGUACCGgU---------GCGUCCGgCG-GUGCaCG- -5'
23703 5' -60 NC_005261.1 + 84262 0.66 0.7164
Target:  5'- --uUGGCCcccggcaugGCGCAGguGCCGCCgGCG-GCc -3'
miRNA:   3'- aguACCGG---------UGCGUC--CGGCGG-UGCaCG- -5'
23703 5' -60 NC_005261.1 + 67094 0.66 0.7164
Target:  5'- cCAUGGCgCGacgcggUGCGGGCgGCgCGCGcagUGCg -3'
miRNA:   3'- aGUACCG-GU------GCGUCCGgCG-GUGC---ACG- -5'
23703 5' -60 NC_005261.1 + 31111 0.66 0.7164
Target:  5'- ---cGGCCccgccgccgACgGCGGcuuCCGCCGCGUGCc -3'
miRNA:   3'- aguaCCGG---------UG-CGUCc--GGCGGUGCACG- -5'
23703 5' -60 NC_005261.1 + 109873 0.66 0.7164
Target:  5'- gCAgcggGGCC-CGCGGGCgggCGCCcCGggGCu -3'
miRNA:   3'- aGUa---CCGGuGCGUCCG---GCGGuGCa-CG- -5'
23703 5' -60 NC_005261.1 + 1318 0.66 0.7164
Target:  5'- ---cGGCaCGCGCuccgggacGCCGCCGCGccGCg -3'
miRNA:   3'- aguaCCG-GUGCGuc------CGGCGGUGCa-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.