miRNA display CGI


Results 21 - 40 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23704 3' -70.2 NC_005261.1 + 109504 0.66 0.330981
Target:  5'- --gCCCGCGcCCGCCGCgggguuuauugcgcgCCCgCCGCGgGn -3'
miRNA:   3'- gggGGGCGC-GGCGGCG---------------GGG-GGUGCgC- -5'
23704 3' -70.2 NC_005261.1 + 73004 0.66 0.328278
Target:  5'- gCgUCCGCGuCCGCC-CaCCCCaGCGCGu -3'
miRNA:   3'- gGgGGGCGC-GGCGGcG-GGGGgUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 102978 0.66 0.328278
Target:  5'- -gCUCCGcCGCCGCgCGCgacacggcggCCgCCACGCGc -3'
miRNA:   3'- ggGGGGC-GCGGCG-GCG----------GGgGGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 46468 0.66 0.328278
Target:  5'- gCCCUCgaaGCGCaggugcagcuCGgCGCCCUCCGCGgGg -3'
miRNA:   3'- -GGGGGg--CGCG----------GCgGCGGGGGGUGCgC- -5'
23704 3' -70.2 NC_005261.1 + 53547 0.66 0.328278
Target:  5'- gCUCUucggCCGCGCCGCgGCCCag-GCGCa -3'
miRNA:   3'- -GGGG----GGCGCGGCGgCGGGgggUGCGc -5'
23704 3' -70.2 NC_005261.1 + 3375 0.66 0.328278
Target:  5'- gCCgCgaGCGCgGCCGCCagCCGCGCc -3'
miRNA:   3'- -GGgGggCGCGgCGGCGGggGGUGCGc -5'
23704 3' -70.2 NC_005261.1 + 63816 0.66 0.328278
Target:  5'- --aCCCGaCGCCGCCGaCUgCCUcgugGCGCGc -3'
miRNA:   3'- gggGGGC-GCGGCGGC-GGgGGG----UGCGC- -5'
23704 3' -70.2 NC_005261.1 + 91901 0.66 0.328278
Target:  5'- gCCCCCGC-CC-CCG-UCCCgGCGCa -3'
miRNA:   3'- gGGGGGCGcGGcGGCgGGGGgUGCGc -5'
23704 3' -70.2 NC_005261.1 + 70471 0.66 0.328278
Target:  5'- --gCCCGCGCCGCgGgUgCgCGCGCGu -3'
miRNA:   3'- gggGGGCGCGGCGgCgGgGgGUGCGC- -5'
23704 3' -70.2 NC_005261.1 + 31095 0.66 0.328278
Target:  5'- -gCCCCaUGCCGCCcggcgGCCCCgCCGCcgacgGCGg -3'
miRNA:   3'- ggGGGGcGCGGCGG-----CGGGG-GGUG-----CGC- -5'
23704 3' -70.2 NC_005261.1 + 101072 0.66 0.328278
Target:  5'- gCCCCagcaccaCGC-CCGCgGCCgCCUgcaGCGCGg -3'
miRNA:   3'- -GGGGg------GCGcGGCGgCGGgGGG---UGCGC- -5'
23704 3' -70.2 NC_005261.1 + 79855 0.66 0.327606
Target:  5'- gCCgCCGCGCUgggguugagcuugGCCGCCUcggCCCACaggGCGc -3'
miRNA:   3'- gGGgGGCGCGG-------------CGGCGGG---GGGUG---CGC- -5'
23704 3' -70.2 NC_005261.1 + 93425 0.66 0.327606
Target:  5'- gCgCCCCGCgaugugcuugaggGCCGUgGCCagcaccggCCCCAgCGCGg -3'
miRNA:   3'- -GgGGGGCG-------------CGGCGgCGG--------GGGGU-GCGC- -5'
23704 3' -70.2 NC_005261.1 + 77878 0.66 0.321595
Target:  5'- uCCaggCUCGCGuCCGCCGUCuCCUCGCuGCa -3'
miRNA:   3'- -GGg--GGGCGC-GGCGGCGG-GGGGUG-CGc -5'
23704 3' -70.2 NC_005261.1 + 5134 0.66 0.321595
Target:  5'- gCCCgCCgGCGCuCGCgCGCCUcggCCCG-GCGg -3'
miRNA:   3'- -GGG-GGgCGCG-GCG-GCGGG---GGGUgCGC- -5'
23704 3' -70.2 NC_005261.1 + 22621 0.66 0.321595
Target:  5'- uCCCgUCGCGUC-CCGCCCCgUcccgucccuagACGCGc -3'
miRNA:   3'- -GGGgGGCGCGGcGGCGGGGgG-----------UGCGC- -5'
23704 3' -70.2 NC_005261.1 + 12956 0.66 0.321595
Target:  5'- gCCCgCGCGgCGCgCGCaCCCCAgacaGCGa -3'
miRNA:   3'- gGGGgGCGCgGCG-GCGgGGGGUg---CGC- -5'
23704 3' -70.2 NC_005261.1 + 98305 0.66 0.321595
Target:  5'- gCCUCgggggcggGCGCCGCCGCCagcggcggcgcgCCCCgugucgACGCGg -3'
miRNA:   3'- gGGGGg-------CGCGGCGGCGG------------GGGG------UGCGC- -5'
23704 3' -70.2 NC_005261.1 + 58538 0.66 0.321595
Target:  5'- -gCCCa--GCCGCCGCCCgggcuCCUGCGCc -3'
miRNA:   3'- ggGGGgcgCGGCGGCGGG-----GGGUGCGc -5'
23704 3' -70.2 NC_005261.1 + 82553 0.66 0.321595
Target:  5'- cCUCgCCCGCgGCCGCgCGCCgcagcagCUCGCGCa -3'
miRNA:   3'- -GGG-GGGCG-CGGCG-GCGGg------GGGUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.