miRNA display CGI


Results 81 - 100 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 55210 0.66 0.865019
Target:  5'- aGCUCG-GUGCgCAcCCGCA-GCuGCCGCGu -3'
miRNA:   3'- -CGGGUaCAUG-GU-GGUGUaCG-CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 63949 0.66 0.865019
Target:  5'- cGCCCccccggcgggggGUGggggcGCCGCCcCcgGCGCgGCGu -3'
miRNA:   3'- -CGGG------------UACa----UGGUGGuGuaCGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 102786 0.66 0.865019
Target:  5'- cGCCCGgcc-CCGCCGCG-GCaGCCGUu -3'
miRNA:   3'- -CGGGUacauGGUGGUGUaCG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 118979 0.66 0.865019
Target:  5'- gGCCCGUGUGCCgcGCCGaaguCGCCcagGCa -3'
miRNA:   3'- -CGGGUACAUGG--UGGUguacGCGG---CGc -5'
23705 3' -56.9 NC_005261.1 + 87658 0.67 0.816385
Target:  5'- cGCCCucg--UCGCCGCAcGCGCuCGCGc -3'
miRNA:   3'- -CGGGuacauGGUGGUGUaCGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 34352 0.67 0.816385
Target:  5'- cGCgCAggaaGUACUGCCGCA-GCGCCuCGg -3'
miRNA:   3'- -CGgGUa---CAUGGUGGUGUaCGCGGcGC- -5'
23705 3' -56.9 NC_005261.1 + 52459 0.67 0.816385
Target:  5'- uGCUC-UGgaugGCgGCCAgG-GCGCCGCGg -3'
miRNA:   3'- -CGGGuACa---UGgUGGUgUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 55585 0.67 0.816385
Target:  5'- cGCCgCG---GCCACCuGCAgccgGUGCCGCGc -3'
miRNA:   3'- -CGG-GUacaUGGUGG-UGUa---CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 82824 0.67 0.816385
Target:  5'- cGCCCAcGUcGCCcCCGCAgucCGCgGCGg -3'
miRNA:   3'- -CGGGUaCA-UGGuGGUGUac-GCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 109209 0.67 0.816385
Target:  5'- gGCCCGgc-GCCcucGCCGCG-GCGcCCGCGc -3'
miRNA:   3'- -CGGGUacaUGG---UGGUGUaCGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 121673 0.67 0.816385
Target:  5'- cGCgCcgGUACUggcccucggcgaGCCGCGcggGCGCCGCc -3'
miRNA:   3'- -CGgGuaCAUGG------------UGGUGUa--CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 18506 0.67 0.816385
Target:  5'- aGCCgagggCGUGUA-CACCug--GCGCCGCGa -3'
miRNA:   3'- -CGG-----GUACAUgGUGGuguaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 73796 0.67 0.824953
Target:  5'- cGCCCAUGcUGCagcaGCCGCc-GCG-CGCGa -3'
miRNA:   3'- -CGGGUAC-AUGg---UGGUGuaCGCgGCGC- -5'
23705 3' -56.9 NC_005261.1 + 135610 0.67 0.824953
Target:  5'- cGCCCccGagggGCUGCCGCcgGCGgCCGgGa -3'
miRNA:   3'- -CGGGuaCa---UGGUGGUGuaCGC-GGCgC- -5'
23705 3' -56.9 NC_005261.1 + 113850 0.67 0.824953
Target:  5'- cGCCCAcGUACCugGCCGgGcgGCGCCa-- -3'
miRNA:   3'- -CGGGUaCAUGG--UGGUgUa-CGCGGcgc -5'
23705 3' -56.9 NC_005261.1 + 109617 0.67 0.824953
Target:  5'- cGCCUGg--GCCGCgGCGcggGCGCuCGCGg -3'
miRNA:   3'- -CGGGUacaUGGUGgUGUa--CGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 93409 0.67 0.824953
Target:  5'- gGCCCGggcggGCCGCCACAgGUGCU-CGa -3'
miRNA:   3'- -CGGGUaca--UGGUGGUGUaCGCGGcGC- -5'
23705 3' -56.9 NC_005261.1 + 56261 0.67 0.824953
Target:  5'- cGUCCGaggcgcgguUGU-CCACCAcCGUGC-CCGCGc -3'
miRNA:   3'- -CGGGU---------ACAuGGUGGU-GUACGcGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 44563 0.67 0.824953
Target:  5'- cGCCgCA---GCCGCCGgGcgGCGCCGCc -3'
miRNA:   3'- -CGG-GUacaUGGUGGUgUa-CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 75713 0.67 0.788799
Target:  5'- cGCgCCAcgGUcgacGCCAUCACcgcgcugcuccugGUGCGCCGCc -3'
miRNA:   3'- -CG-GGUa-CA----UGGUGGUG-------------UACGCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.