miRNA display CGI


Results 121 - 140 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 60209 0.67 0.814651
Target:  5'- aGCCCGgg-GCCauuGCCACuguggacgccaGCGCCGUGg -3'
miRNA:   3'- -CGGGUacaUGG---UGGUGua---------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 5365 0.67 0.816385
Target:  5'- aCCCGcgGgcgcGCCACCGCGcacgcacgugcUGCGCgGCGu -3'
miRNA:   3'- cGGGUa-Ca---UGGUGGUGU-----------ACGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 121673 0.67 0.816385
Target:  5'- cGCgCcgGUACUggcccucggcgaGCCGCGcggGCGCCGCc -3'
miRNA:   3'- -CGgGuaCAUGG------------UGGUGUa--CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 109209 0.67 0.816385
Target:  5'- gGCCCGgc-GCCcucGCCGCG-GCGcCCGCGc -3'
miRNA:   3'- -CGGGUacaUGG---UGGUGUaCGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 82824 0.67 0.816385
Target:  5'- cGCCCAcGUcGCCcCCGCAgucCGCgGCGg -3'
miRNA:   3'- -CGGGUaCA-UGGuGGUGUac-GCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 55585 0.67 0.816385
Target:  5'- cGCCgCG---GCCACCuGCAgccgGUGCCGCGc -3'
miRNA:   3'- -CGG-GUacaUGGUGG-UGUa---CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 52459 0.67 0.816385
Target:  5'- uGCUC-UGgaugGCgGCCAgG-GCGCCGCGg -3'
miRNA:   3'- -CGGGuACa---UGgUGGUgUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 133884 0.68 0.771206
Target:  5'- gGCCCcaGUcGCgCGCCcgcGCggGCGCCGCGg -3'
miRNA:   3'- -CGGGuaCA-UG-GUGG---UGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 65423 0.68 0.771206
Target:  5'- cGCCC----GCCGCCGCggGgGuCCGCGa -3'
miRNA:   3'- -CGGGuacaUGGUGGUGuaCgC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 67265 0.68 0.771206
Target:  5'- cGCCCGcGcGCCACgACGcucucaaGCGCCGCc -3'
miRNA:   3'- -CGGGUaCaUGGUGgUGUa------CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 8067 0.68 0.771206
Target:  5'- aGCgCCAUGgacgGCCcgGCCGCGcucggggacGCGCUGCGg -3'
miRNA:   3'- -CG-GGUACa---UGG--UGGUGUa--------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 28079 0.68 0.771206
Target:  5'- cGCCgA-GUacggcaaccgcGCCGCCGCGgacGCGCUGCGc -3'
miRNA:   3'- -CGGgUaCA-----------UGGUGGUGUa--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 46984 0.68 0.771206
Target:  5'- cGCCCGgcgaggacGUggagcgcgacGCCGCCGCGgugaacGCGCUGCGc -3'
miRNA:   3'- -CGGGUa-------CA----------UGGUGGUGUa-----CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 80162 0.68 0.772143
Target:  5'- cGCCCGcGgcggcgggguccucgGCCauGCCGCGccGCGCCGCGc -3'
miRNA:   3'- -CGGGUaCa--------------UGG--UGGUGUa-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 20304 0.68 0.779599
Target:  5'- cGCUCGUcugcuggcGgcCCGCCGCGcagacgcUGCGCCGCc -3'
miRNA:   3'- -CGGGUA--------CauGGUGGUGU-------ACGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 73617 0.68 0.780525
Target:  5'- aGCUCGcGgcgcGCCACgACGUGCGgCGCa -3'
miRNA:   3'- -CGGGUaCa---UGGUGgUGUACGCgGCGc -5'
23705 3' -56.9 NC_005261.1 + 132175 0.68 0.780525
Target:  5'- cGCCCAg--ACCuggcgguCCAgGUGCGCC-CGg -3'
miRNA:   3'- -CGGGUacaUGGu------GGUgUACGCGGcGC- -5'
23705 3' -56.9 NC_005261.1 + 105989 0.68 0.780525
Target:  5'- uCCCGgagcgcGUGCCGCCGCcgGCGaCGgGa -3'
miRNA:   3'- cGGGUa-----CAUGGUGGUGuaCGCgGCgC- -5'
23705 3' -56.9 NC_005261.1 + 41019 0.68 0.780525
Target:  5'- gGCCCGggcGUGUCGCCGCGcgGCuuucgcgccuGCCGCGg -3'
miRNA:   3'- -CGGGUa--CAUGGUGGUGUa-CG----------CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 16987 0.68 0.780525
Target:  5'- uGCCCGaGUGCgACgGC-UGCcGCCGCc -3'
miRNA:   3'- -CGGGUaCAUGgUGgUGuACG-CGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.