miRNA display CGI


Results 141 - 160 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 22040 0.68 0.756041
Target:  5'- cCCCGUgcggguucguccGUGCCGCCGCGcGCaaugccgaucgggggGCCGCGu -3'
miRNA:   3'- cGGGUA------------CAUGGUGGUGUaCG---------------CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 31087 0.68 0.752205
Target:  5'- cGCCgCGgccacgGCCGCCGCGUGCaGCuCGCc -3'
miRNA:   3'- -CGG-GUaca---UGGUGGUGUACG-CG-GCGc -5'
23705 3' -56.9 NC_005261.1 + 31435 0.68 0.752205
Target:  5'- gGCCCGggcgcgcuCCGCCucggcGCGcGCGCCGCGc -3'
miRNA:   3'- -CGGGUacau----GGUGG-----UGUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 50476 0.68 0.765554
Target:  5'- -aCCGUGUgucuGCCGCCACccggggccuggagccGcGCGCCGCc -3'
miRNA:   3'- cgGGUACA----UGGUGGUG---------------UaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 108076 0.68 0.771206
Target:  5'- aGCCCGccggcggaaGUGCCGgCGCGgcugGCGgCCGCGc -3'
miRNA:   3'- -CGGGUa--------CAUGGUgGUGUa---CGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 41019 0.68 0.780525
Target:  5'- gGCCCGggcGUGUCGCCGCGcgGCuuucgcgccuGCCGCGg -3'
miRNA:   3'- -CGGGUa--CAUGGUGGUGUa-CG----------CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 105989 0.68 0.780525
Target:  5'- uCCCGgagcgcGUGCCGCCGCcgGCGaCGgGa -3'
miRNA:   3'- cGGGUa-----CAUGGUGGUGuaCGCgGCgC- -5'
23705 3' -56.9 NC_005261.1 + 132175 0.68 0.780525
Target:  5'- cGCCCAg--ACCuggcgguCCAgGUGCGCC-CGg -3'
miRNA:   3'- -CGGGUacaUGGu------GGUgUACGCGGcGC- -5'
23705 3' -56.9 NC_005261.1 + 73617 0.68 0.780525
Target:  5'- aGCUCGcGgcgcGCCACgACGUGCGgCGCa -3'
miRNA:   3'- -CGGGUaCa---UGGUGgUGUACGCgGCGc -5'
23705 3' -56.9 NC_005261.1 + 20304 0.68 0.779599
Target:  5'- cGCUCGUcugcuggcGgcCCGCCGCGcagacgcUGCGCCGCc -3'
miRNA:   3'- -CGGGUA--------CauGGUGGUGU-------ACGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 80162 0.68 0.772143
Target:  5'- cGCCCGcGgcggcgggguccucgGCCauGCCGCGccGCGCCGCGc -3'
miRNA:   3'- -CGGGUaCa--------------UGG--UGGUGUa-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 46984 0.68 0.771206
Target:  5'- cGCCCGgcgaggacGUggagcgcgacGCCGCCGCGgugaacGCGCUGCGc -3'
miRNA:   3'- -CGGGUa-------CA----------UGGUGGUGUa-----CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 133884 0.68 0.771206
Target:  5'- gGCCCcaGUcGCgCGCCcgcGCggGCGCCGCGg -3'
miRNA:   3'- -CGGGuaCA-UG-GUGG---UGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 65423 0.68 0.771206
Target:  5'- cGCCC----GCCGCCGCggGgGuCCGCGa -3'
miRNA:   3'- -CGGGuacaUGGUGGUGuaCgC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 67265 0.68 0.771206
Target:  5'- cGCCCGcGcGCCACgACGcucucaaGCGCCGCc -3'
miRNA:   3'- -CGGGUaCaUGGUGgUGUa------CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 8067 0.68 0.771206
Target:  5'- aGCgCCAUGgacgGCCcgGCCGCGcucggggacGCGCUGCGg -3'
miRNA:   3'- -CG-GGUACa---UGG--UGGUGUa--------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 28079 0.68 0.771206
Target:  5'- cGCCgA-GUacggcaaccgcGCCGCCGCGgacGCGCUGCGc -3'
miRNA:   3'- -CGGgUaCA-----------UGGUGGUGUa--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 33879 0.68 0.771206
Target:  5'- cGCuCCGUGgcgGCCGCgACG-GCGgCCGCc -3'
miRNA:   3'- -CG-GGUACa--UGGUGgUGUaCGC-GGCGc -5'
23705 3' -56.9 NC_005261.1 + 52860 0.68 0.771206
Target:  5'- cGUCCAUGUcgcgcgcgggcgGCUccgucugcggcGCCGCGagguucgGCGCCGCGa -3'
miRNA:   3'- -CGGGUACA------------UGG-----------UGGUGUa------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 74668 0.68 0.771206
Target:  5'- gGUCCGUGaGCgGCgugCGCAUG-GCCGCGg -3'
miRNA:   3'- -CGGGUACaUGgUG---GUGUACgCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.