miRNA display CGI


Results 61 - 80 of 341 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 95715 0.72 0.520986
Target:  5'- cGgCCGg--GCCGCCGCcgGCaGCCGCGc -3'
miRNA:   3'- -CgGGUacaUGGUGGUGuaCG-CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 96354 0.72 0.51122
Target:  5'- gGCCCcgucgcgGUACUgcGCCGaauCGUGCGCCGCa -3'
miRNA:   3'- -CGGGua-----CAUGG--UGGU---GUACGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 134090 0.72 0.550694
Target:  5'- gGCCCcgcgGCCGCCGCGUaGCG-CGCGg -3'
miRNA:   3'- -CGGGuacaUGGUGGUGUA-CGCgGCGC- -5'
23705 3' -56.9 NC_005261.1 + 26764 0.72 0.540728
Target:  5'- gGCgCCGUGccGCCGCCGCccGCcGCCGCc -3'
miRNA:   3'- -CG-GGUACa-UGGUGGUGuaCG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 49608 0.72 0.550694
Target:  5'- gGCCCug--GCCGCCg---GCGCCGCGc -3'
miRNA:   3'- -CGGGuacaUGGUGGuguaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 38799 0.72 0.540728
Target:  5'- cGCCCAgcgaGU-CCACCGCGaGCGUCGUc -3'
miRNA:   3'- -CGGGUa---CAuGGUGGUGUaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 94380 0.72 0.505397
Target:  5'- aGCCCGgcuucggcgcggcgGgcgGCCGCCGCGcgGCGgCCGCGg -3'
miRNA:   3'- -CGGGUa-------------Ca--UGGUGGUGUa-CGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 136481 0.72 0.501531
Target:  5'- cGCUCAg--GCCAgCGCGcggcgcacUGCGCCGCGg -3'
miRNA:   3'- -CGGGUacaUGGUgGUGU--------ACGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 74338 0.71 0.611437
Target:  5'- cGCCgCGUGgugCGCCACcgGCuGCCGCa -3'
miRNA:   3'- -CGG-GUACaugGUGGUGuaCG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 106613 0.71 0.601233
Target:  5'- cGCgCCGcgGUGCUGCCcgcggcGCAgUGCGCCGCGc -3'
miRNA:   3'- -CG-GGUa-CAUGGUGG------UGU-ACGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 58289 0.71 0.601233
Target:  5'- cGCgCCGcgGUACCgGCUugG-GCGCCGCGg -3'
miRNA:   3'- -CG-GGUa-CAUGG-UGGugUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 136709 0.71 0.601233
Target:  5'- cGCCCGUcGaGCCGCgGCAgcacGCGCUGCc -3'
miRNA:   3'- -CGGGUA-CaUGGUGgUGUa---CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 32171 0.71 0.611437
Target:  5'- cGCCCGcg-GCCGCCugGcgcgGcCGCCGCGc -3'
miRNA:   3'- -CGGGUacaUGGUGGugUa---C-GCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 35445 0.71 0.611437
Target:  5'- cGCCgcUGcggcgGCgGCCGCggGCGCCGCGg -3'
miRNA:   3'- -CGGguACa----UGgUGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 137014 0.71 0.611437
Target:  5'- gGUCCGcGUcCCagGCCACGccggGCGCCGCGg -3'
miRNA:   3'- -CGGGUaCAuGG--UGGUGUa---CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 31367 0.71 0.611437
Target:  5'- uGCCCAaGgagcaggGCgCGCCAC--GCGCCGCGu -3'
miRNA:   3'- -CGGGUaCa------UG-GUGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 608 0.71 0.591052
Target:  5'- cGCCCccGggccccGCCGCCcgcGCcgGCGCCGCc -3'
miRNA:   3'- -CGGGuaCa-----UGGUGG---UGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 106474 0.71 0.601233
Target:  5'- aCCCcgGggcGCCGCCGCuggGCucuGCCGCGg -3'
miRNA:   3'- cGGGuaCa--UGGUGGUGua-CG---CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 60404 0.71 0.591052
Target:  5'- cGCCCGUgccGUGCCuGCCGCAgcagcaGCaGCCGCc -3'
miRNA:   3'- -CGGGUA---CAUGG-UGGUGUa-----CG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 32037 0.71 0.591052
Target:  5'- cGCCCcc--GCCGCCGCGcUGaCGCCGCc -3'
miRNA:   3'- -CGGGuacaUGGUGGUGU-AC-GCGGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.