miRNA display CGI


Results 101 - 120 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 14815 0.7 0.631883
Target:  5'- gGCCCccGUA-CACCGC-UGCGCCGg- -3'
miRNA:   3'- -CGGGuaCAUgGUGGUGuACGCGGCgc -5'
23705 3' -56.9 NC_005261.1 + 13504 0.7 0.639043
Target:  5'- gGCCCggGUuccuggccgcccccGCCGCCACGcgGgaaGCCGCGg -3'
miRNA:   3'- -CGGGuaCA--------------UGGUGGUGUa-Cg--CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 30497 0.7 0.64211
Target:  5'- gGCCCGcuUGUccgcggccgcgGCCucgGCCACGaGUGCCGCGc -3'
miRNA:   3'- -CGGGU--ACA-----------UGG---UGGUGUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 137771 0.7 0.64211
Target:  5'- uGCCCgacgcaggggauGUGgcgGCgGCCGCcaGCGCCGCGu -3'
miRNA:   3'- -CGGG------------UACa--UGgUGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 106084 0.7 0.65233
Target:  5'- cGCCCccGccGCCGCCGCGgccgcgGCGCCcgGCGu -3'
miRNA:   3'- -CGGGuaCa-UGGUGGUGUa-----CGCGG--CGC- -5'
23705 3' -56.9 NC_005261.1 + 57360 0.7 0.65233
Target:  5'- gGUCCGUGUACUgguucgugaugGCCGCGUacGUGCUGCc -3'
miRNA:   3'- -CGGGUACAUGG-----------UGGUGUA--CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 78621 0.7 0.65233
Target:  5'- cUCCAUGUGCUcgGCCGCA-GCGaCgGCGg -3'
miRNA:   3'- cGGGUACAUGG--UGGUGUaCGC-GgCGC- -5'
23705 3' -56.9 NC_005261.1 + 13851 0.7 0.662533
Target:  5'- aGCCCAUgcggcGUACCgGCCAucuccCAggcGCGCCGCu -3'
miRNA:   3'- -CGGGUA-----CAUGG-UGGU-----GUa--CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 21806 0.7 0.662533
Target:  5'- cGCCgAg--GCCACCGCcaagAUGCuGCCGCa -3'
miRNA:   3'- -CGGgUacaUGGUGGUG----UACG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 20340 0.7 0.662533
Target:  5'- cGCCCGcgcUGgcgGCCGCgGCA-GCGgCCGCa -3'
miRNA:   3'- -CGGGU---ACa--UGGUGgUGUaCGC-GGCGc -5'
23705 3' -56.9 NC_005261.1 + 1460 0.7 0.662533
Target:  5'- gGCgCAUGUGgUGgUACAUGgGCCGCGu -3'
miRNA:   3'- -CGgGUACAUgGUgGUGUACgCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 19766 0.7 0.662533
Target:  5'- uGCCCug--GCCGCCGCG-GCGgCGCu -3'
miRNA:   3'- -CGGGuacaUGGUGGUGUaCGCgGCGc -5'
23705 3' -56.9 NC_005261.1 + 104965 0.7 0.662533
Target:  5'- cGCCgCAgccGCCGCCGCAgccGcCGCCGCa -3'
miRNA:   3'- -CGG-GUacaUGGUGGUGUa--C-GCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 105001 0.7 0.662533
Target:  5'- cGCCgCAgccGCCGCCGCAgccGcCGCCGCa -3'
miRNA:   3'- -CGG-GUacaUGGUGGUGUa--C-GCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 13257 0.7 0.662533
Target:  5'- cGUCUGUGUccauAgCAUCGCcgGCGCCGUGa -3'
miRNA:   3'- -CGGGUACA----UgGUGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 19973 0.7 0.662533
Target:  5'- aGCCgCGcuggcUGUcGCCGCCGCGgacGcCGCCGCGg -3'
miRNA:   3'- -CGG-GU-----ACA-UGGUGGUGUa--C-GCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 70906 0.7 0.662533
Target:  5'- aGCCCGcg-GCCGCCGCca--GCCGCGc -3'
miRNA:   3'- -CGGGUacaUGGUGGUGuacgCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 37677 0.69 0.672712
Target:  5'- cGCCCGa--GCCGCgGCc-GCGCCGCGc -3'
miRNA:   3'- -CGGGUacaUGGUGgUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 35022 0.69 0.672712
Target:  5'- cCCCAgcucgGCCGCgCGCcgccGCGCCGCGg -3'
miRNA:   3'- cGGGUaca--UGGUG-GUGua--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 44875 0.69 0.672712
Target:  5'- gGCgCCGUGUugGCCGcgaggaagcCCGCGcGCGCCGCc -3'
miRNA:   3'- -CG-GGUACA--UGGU---------GGUGUaCGCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.