miRNA display CGI


Results 121 - 140 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 10611 0.69 0.672712
Target:  5'- cGCCCGgcUGCUcgaGCgGCGggccgGCGCCGCGg -3'
miRNA:   3'- -CGGGUacAUGG---UGgUGUa----CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 44875 0.69 0.672712
Target:  5'- gGCgCCGUGUugGCCGcgaggaagcCCGCGcGCGCCGCc -3'
miRNA:   3'- -CG-GGUACA--UGGU---------GGUGUaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 52743 0.69 0.679818
Target:  5'- gGUCCAUGaagcGCCGCCGCAgcacgggcuggaacUGCG-CGCGa -3'
miRNA:   3'- -CGGGUACa---UGGUGGUGU--------------ACGCgGCGC- -5'
23705 3' -56.9 NC_005261.1 + 124737 0.69 0.682858
Target:  5'- cGCgCCGUGccGCCGCCGCGgggGgGgCGCGg -3'
miRNA:   3'- -CG-GGUACa-UGGUGGUGUa--CgCgGCGC- -5'
23705 3' -56.9 NC_005261.1 + 101611 0.69 0.682858
Target:  5'- gGCCCGUgcGUugCGCCGagacuuUGCGCCGg- -3'
miRNA:   3'- -CGGGUA--CAugGUGGUgu----ACGCGGCgc -5'
23705 3' -56.9 NC_005261.1 + 36119 0.69 0.682858
Target:  5'- cGCCCGgucgGCCuGCCGCGccaGCGgCCGCGg -3'
miRNA:   3'- -CGGGUaca-UGG-UGGUGUa--CGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 24909 0.69 0.682858
Target:  5'- cGCCCGaaccUGCCGCUgauGCGcGCGCUGCGa -3'
miRNA:   3'- -CGGGUac--AUGGUGG---UGUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 31814 0.69 0.682858
Target:  5'- gGCCCcgGgGCCGCCGC--GCGgCGCu -3'
miRNA:   3'- -CGGGuaCaUGGUGGUGuaCGCgGCGc -5'
23705 3' -56.9 NC_005261.1 + 35109 0.69 0.682858
Target:  5'- cGCgCCggGUGCCGCgCGCA-GCcCCGCGa -3'
miRNA:   3'- -CG-GGuaCAUGGUG-GUGUaCGcGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 74447 0.69 0.682858
Target:  5'- aGCCCggGUGCaGCCcCGUGCGCaGCu -3'
miRNA:   3'- -CGGGuaCAUGgUGGuGUACGCGgCGc -5'
23705 3' -56.9 NC_005261.1 + 15574 0.69 0.682858
Target:  5'- cGCCC----GCCAgCACccGCGCUGCGg -3'
miRNA:   3'- -CGGGuacaUGGUgGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 46914 0.69 0.692962
Target:  5'- uCCCAgcgGcGCCGCCGCGgcCGCCGCc -3'
miRNA:   3'- cGGGUa--CaUGGUGGUGUacGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 51682 0.69 0.692962
Target:  5'- cGCCCAgcgcGUccagcuucGCCGCCuCGUcCGCCGCGc -3'
miRNA:   3'- -CGGGUa---CA--------UGGUGGuGUAcGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 123122 0.69 0.692962
Target:  5'- cGCCCcgGcGgCGCCGCcgGgGCgCGCGg -3'
miRNA:   3'- -CGGGuaCaUgGUGGUGuaCgCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 54807 0.69 0.692962
Target:  5'- cGCCCGcg-GCCGCCAgCAgcGCGUCGCu -3'
miRNA:   3'- -CGGGUacaUGGUGGU-GUa-CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 137066 0.69 0.692962
Target:  5'- cGCUCcgGgacGCCGCCGCGccGCGCCuGCa -3'
miRNA:   3'- -CGGGuaCa--UGGUGGUGUa-CGCGG-CGc -5'
23705 3' -56.9 NC_005261.1 + 508 0.69 0.692962
Target:  5'- gGCCagcgGUGCCGCCGCcgccccugGUGCuCGCGg -3'
miRNA:   3'- -CGGgua-CAUGGUGGUGua------CGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 32706 0.69 0.692962
Target:  5'- cGCCCAUGgcgcccacgAUCACCA---GCGCCaGCGa -3'
miRNA:   3'- -CGGGUACa--------UGGUGGUguaCGCGG-CGC- -5'
23705 3' -56.9 NC_005261.1 + 138191 0.69 0.692962
Target:  5'- gGCCagcgGUGCCGCCGCcgccccugGUGCuCGCGg -3'
miRNA:   3'- -CGGgua-CAUGGUGGUGua------CGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 18206 0.69 0.692962
Target:  5'- cGCCCAc---CCGCC-CAaccUGCGCUGCGa -3'
miRNA:   3'- -CGGGUacauGGUGGuGU---ACGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.