miRNA display CGI


Results 141 - 160 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 11783 0.69 0.703016
Target:  5'- gGCCCGcGUACCGCUcuuCccGCGCgCGCa -3'
miRNA:   3'- -CGGGUaCAUGGUGGu--GuaCGCG-GCGc -5'
23705 3' -56.9 NC_005261.1 + 12686 0.69 0.703016
Target:  5'- gGCCCGgcgacgGCCGCCGCggGCucggcuggggccGCCGCa -3'
miRNA:   3'- -CGGGUaca---UGGUGGUGuaCG------------CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 84692 0.69 0.703016
Target:  5'- aGCCCccGgg-CGCCGC--GCGCCGCGg -3'
miRNA:   3'- -CGGGuaCaugGUGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 136379 0.69 0.703016
Target:  5'- gGUCCAcggcGUcgaucacgaucaGCCGCCGCc-GCGCCGCGg -3'
miRNA:   3'- -CGGGUa---CA------------UGGUGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 62285 0.69 0.703016
Target:  5'- aGCUgGaGaACCGCCACc-GCGCCGCGc -3'
miRNA:   3'- -CGGgUaCaUGGUGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 27433 0.69 0.707021
Target:  5'- gGCCCAcccgggagagcugcaUGUacGCCGCCuuCGUGCGCCuGgGg -3'
miRNA:   3'- -CGGGU---------------ACA--UGGUGGu-GUACGCGG-CgC- -5'
23705 3' -56.9 NC_005261.1 + 17916 0.69 0.712013
Target:  5'- gGCCCGUcGacuacaccugcacUGCCACCGgcuacCcgGCGCCGCu -3'
miRNA:   3'- -CGGGUA-C-------------AUGGUGGU-----GuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 37307 0.69 0.713009
Target:  5'- cGCCCGcg-GCCGCCuGCAgcGCGgCCGCGc -3'
miRNA:   3'- -CGGGUacaUGGUGG-UGUa-CGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 38303 0.69 0.713009
Target:  5'- cGCCCcucgccGCCGCCGC-UGCcGCCGCc -3'
miRNA:   3'- -CGGGuaca--UGGUGGUGuACG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 41285 0.69 0.713009
Target:  5'- gGCgCCAgccggGCCGCgGCcggagGCGCCGCGg -3'
miRNA:   3'- -CG-GGUaca--UGGUGgUGua---CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 78360 0.69 0.713009
Target:  5'- aGCCC----GCCGCCGUcgGCGCCGaCGg -3'
miRNA:   3'- -CGGGuacaUGGUGGUGuaCGCGGC-GC- -5'
23705 3' -56.9 NC_005261.1 + 108543 0.69 0.713009
Target:  5'- cGCgCCGUGcucgccgGCCGCgcggCGCcgGCGCCGCu -3'
miRNA:   3'- -CG-GGUACa------UGGUG----GUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 77675 0.69 0.713009
Target:  5'- gGCgCAcggcgGUGCCACCGCGUGC-UCGUGc -3'
miRNA:   3'- -CGgGUa----CAUGGUGGUGUACGcGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 96001 0.69 0.722934
Target:  5'- gGCCCAgcUGcGCCugCACGUGguUGgCGCGg -3'
miRNA:   3'- -CGGGU--ACaUGGugGUGUAC--GCgGCGC- -5'
23705 3' -56.9 NC_005261.1 + 107310 0.69 0.722934
Target:  5'- cGCCCGcGUGCUggGCCcCAUGCcGCCcgGCGg -3'
miRNA:   3'- -CGGGUaCAUGG--UGGuGUACG-CGG--CGC- -5'
23705 3' -56.9 NC_005261.1 + 128161 0.69 0.722934
Target:  5'- uGCCCAggcgGgcCCGCgCACucgcCGCCGCGg -3'
miRNA:   3'- -CGGGUa---CauGGUG-GUGuac-GCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 134263 0.69 0.722934
Target:  5'- gGCCCcgGcaGCC-CUGCAcGCGCCGCu -3'
miRNA:   3'- -CGGGuaCa-UGGuGGUGUaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 87529 0.69 0.722934
Target:  5'- cGCCCAgGUcggcGCCuucGCCGCGcugGCGCUGCu -3'
miRNA:   3'- -CGGGUaCA----UGG---UGGUGUa--CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 22923 0.68 0.729836
Target:  5'- cGCCUcgGUGUcggucgcgggcucgGCCGCgGCGgcGCGCCGCa -3'
miRNA:   3'- -CGGG--UACA--------------UGGUGgUGUa-CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 3848 0.68 0.732781
Target:  5'- cGCagaCGUG-ACCGCCccuugcuggGCG-GCGCCGCGg -3'
miRNA:   3'- -CGg--GUACaUGGUGG---------UGUaCGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.