miRNA display CGI


Results 101 - 120 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 18506 0.67 0.816385
Target:  5'- aGCCgagggCGUGUA-CACCug--GCGCCGCGa -3'
miRNA:   3'- -CGG-----GUACAUgGUGGuguaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 60209 0.67 0.814651
Target:  5'- aGCCCGgg-GCCauuGCCACuguggacgccaGCGCCGUGg -3'
miRNA:   3'- -CGGGUacaUGG---UGGUGua---------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 79337 0.67 0.811163
Target:  5'- aGCUCAgcgcGcGCgGCCGCggagagcgcgcgcggGUGCGCCGCGc -3'
miRNA:   3'- -CGGGUa---CaUGgUGGUG---------------UACGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 104038 0.67 0.80765
Target:  5'- gGCCgAcGggGCCgggcGCCGCGcgGCGCCGCGc -3'
miRNA:   3'- -CGGgUaCa-UGG----UGGUGUa-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 81073 0.67 0.80765
Target:  5'- cGUCCAUGacucgcaGCUGCCAgCcgGCGCCGUu -3'
miRNA:   3'- -CGGGUACa------UGGUGGU-GuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 4624 0.67 0.80765
Target:  5'- cGCCCc-GUGCCuCCACGcccucgUGCGgCGCa -3'
miRNA:   3'- -CGGGuaCAUGGuGGUGU------ACGCgGCGc -5'
23705 3' -56.9 NC_005261.1 + 30531 0.67 0.80765
Target:  5'- cGCCCucgccgGCCGCC-CGcGCGCuCGCGc -3'
miRNA:   3'- -CGGGuaca--UGGUGGuGUaCGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 127357 0.67 0.802332
Target:  5'- gGCCCGUcccccggcggcacucGggcGCCGCC-CAgGCGCCGCc -3'
miRNA:   3'- -CGGGUA---------------Ca--UGGUGGuGUaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 136022 0.67 0.798756
Target:  5'- aGgCCAcGcGCCGCCGCA-GCGgCGCGc -3'
miRNA:   3'- -CgGGUaCaUGGUGGUGUaCGCgGCGC- -5'
23705 3' -56.9 NC_005261.1 + 28859 0.67 0.798756
Target:  5'- cGCCCGccgcggGCCcccucGCCACAacCGCCGCGg -3'
miRNA:   3'- -CGGGUaca---UGG-----UGGUGUacGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 118137 0.67 0.798756
Target:  5'- cGCuCCAUGggcgccgagaACCGCCGgGUcGUGUCGCGg -3'
miRNA:   3'- -CG-GGUACa---------UGGUGGUgUA-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 71035 0.67 0.798756
Target:  5'- gGCCCGcGaagGCCGCCgGCAgcgccacCGCCGCGa -3'
miRNA:   3'- -CGGGUaCa--UGGUGG-UGUac-----GCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 46204 0.67 0.798756
Target:  5'- gGCCCGac-GCCGCCGCuggcGCaGCCGCc -3'
miRNA:   3'- -CGGGUacaUGGUGGUGua--CG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 17427 0.67 0.798756
Target:  5'- cGCCCcgcggggcgcGUGCCGCCGCAgGCcCCGUa -3'
miRNA:   3'- -CGGGua--------CAUGGUGGUGUaCGcGGCGc -5'
23705 3' -56.9 NC_005261.1 + 6893 0.67 0.798756
Target:  5'- cGCCUucuu-CCGgCACGUGCGCgCGCa -3'
miRNA:   3'- -CGGGuacauGGUgGUGUACGCG-GCGc -5'
23705 3' -56.9 NC_005261.1 + 19479 0.67 0.798756
Target:  5'- cGUCUggGUccGgCGCCGCGggcgcgGCGCCGCGc -3'
miRNA:   3'- -CGGGuaCA--UgGUGGUGUa-----CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 18375 0.67 0.795155
Target:  5'- cGgCCGUGUGCCgcGCCGCcgaguacuaccCGCCGCGc -3'
miRNA:   3'- -CgGGUACAUGG--UGGUGuac--------GCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 108203 0.67 0.789711
Target:  5'- cGCCgAggcgGCCGCCGCGcuggagGCGgCCGCGc -3'
miRNA:   3'- -CGGgUaca-UGGUGGUGUa-----CGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 31544 0.67 0.789711
Target:  5'- cGUCCAgcccGCCGCCugGggggcggGCGuCCGCGg -3'
miRNA:   3'- -CGGGUaca-UGGUGGugUa------CGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 96112 0.67 0.789711
Target:  5'- cGCCCAgcaGCCGCCGCGagaUGuCGCCcaGCa -3'
miRNA:   3'- -CGGGUacaUGGUGGUGU---AC-GCGG--CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.