miRNA display CGI


Results 121 - 140 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 37000 0.67 0.789711
Target:  5'- cUCCAcg-GCCGCCAgCAgcaGCGCCGCu -3'
miRNA:   3'- cGGGUacaUGGUGGU-GUa--CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 96112 0.67 0.789711
Target:  5'- cGCCCAgcaGCCGCCGCGagaUGuCGCCcaGCa -3'
miRNA:   3'- -CGGGUacaUGGUGGUGU---AC-GCGG--CGc -5'
23705 3' -56.9 NC_005261.1 + 31544 0.67 0.789711
Target:  5'- cGUCCAgcccGCCGCCugGggggcggGCGuCCGCGg -3'
miRNA:   3'- -CGGGUaca-UGGUGGugUa------CGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 108203 0.67 0.789711
Target:  5'- cGCCgAggcgGCCGCCGCGcuggagGCGgCCGCGc -3'
miRNA:   3'- -CGGgUaca-UGGUGGUGUa-----CGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 33185 0.67 0.789711
Target:  5'- cGUCCGcuuucCCGCCGCGcGgGCCGCGg -3'
miRNA:   3'- -CGGGUacau-GGUGGUGUaCgCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 62676 0.67 0.788799
Target:  5'- cGCCacgGUcgacGCCAUCACcgcgcugcuccugGUGCGCCGCc -3'
miRNA:   3'- -CGGguaCA----UGGUGGUG-------------UACGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 75713 0.67 0.788799
Target:  5'- cGCgCCAcgGUcgacGCCAUCACcgcgcugcuccugGUGCGCCGCc -3'
miRNA:   3'- -CG-GGUa-CA----UGGUGGUG-------------UACGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 73617 0.68 0.780525
Target:  5'- aGCUCGcGgcgcGCCACgACGUGCGgCGCa -3'
miRNA:   3'- -CGGGUaCa---UGGUGgUGUACGCgGCGc -5'
23705 3' -56.9 NC_005261.1 + 132175 0.68 0.780525
Target:  5'- cGCCCAg--ACCuggcgguCCAgGUGCGCC-CGg -3'
miRNA:   3'- -CGGGUacaUGGu------GGUgUACGCGGcGC- -5'
23705 3' -56.9 NC_005261.1 + 105989 0.68 0.780525
Target:  5'- uCCCGgagcgcGUGCCGCCGCcgGCGaCGgGa -3'
miRNA:   3'- cGGGUa-----CAUGGUGGUGuaCGCgGCgC- -5'
23705 3' -56.9 NC_005261.1 + 41019 0.68 0.780525
Target:  5'- gGCCCGggcGUGUCGCCGCGcgGCuuucgcgccuGCCGCGg -3'
miRNA:   3'- -CGGGUa--CAUGGUGGUGUa-CG----------CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 16987 0.68 0.780525
Target:  5'- uGCCCGaGUGCgACgGC-UGCcGCCGCc -3'
miRNA:   3'- -CGGGUaCAUGgUGgUGuACG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 56882 0.68 0.780525
Target:  5'- gGCgCGcGcGCCGCCGCcgGCGCCagGCGc -3'
miRNA:   3'- -CGgGUaCaUGGUGGUGuaCGCGG--CGC- -5'
23705 3' -56.9 NC_005261.1 + 20304 0.68 0.779599
Target:  5'- cGCUCGUcugcuggcGgcCCGCCGCGcagacgcUGCGCCGCc -3'
miRNA:   3'- -CGGGUA--------CauGGUGGUGU-------ACGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 80162 0.68 0.772143
Target:  5'- cGCCCGcGgcggcgggguccucgGCCauGCCGCGccGCGCCGCGc -3'
miRNA:   3'- -CGGGUaCa--------------UGG--UGGUGUa-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 28079 0.68 0.771206
Target:  5'- cGCCgA-GUacggcaaccgcGCCGCCGCGgacGCGCUGCGc -3'
miRNA:   3'- -CGGgUaCA-----------UGGUGGUGUa--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 8067 0.68 0.771206
Target:  5'- aGCgCCAUGgacgGCCcgGCCGCGcucggggacGCGCUGCGg -3'
miRNA:   3'- -CG-GGUACa---UGG--UGGUGUa--------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 67265 0.68 0.771206
Target:  5'- cGCCCGcGcGCCACgACGcucucaaGCGCCGCc -3'
miRNA:   3'- -CGGGUaCaUGGUGgUGUa------CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 65423 0.68 0.771206
Target:  5'- cGCCC----GCCGCCGCggGgGuCCGCGa -3'
miRNA:   3'- -CGGGuacaUGGUGGUGuaCgC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 133884 0.68 0.771206
Target:  5'- gGCCCcaGUcGCgCGCCcgcGCggGCGCCGCGg -3'
miRNA:   3'- -CGGGuaCA-UG-GUGG---UGuaCGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.