miRNA display CGI


Results 81 - 100 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 31087 0.68 0.752205
Target:  5'- cGCCgCGgccacgGCCGCCGCGUGCaGCuCGCc -3'
miRNA:   3'- -CGG-GUaca---UGGUGGUGUACG-CG-GCGc -5'
23705 3' -56.9 NC_005261.1 + 31279 0.66 0.871698
Target:  5'- cCCCAgccGcGCCACCGCGccgGCgacggcgcccacgGCCGCGg -3'
miRNA:   3'- cGGGUa--CaUGGUGGUGUa--CG-------------CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 31367 0.71 0.611437
Target:  5'- uGCCCAaGgagcaggGCgCGCCAC--GCGCCGCGu -3'
miRNA:   3'- -CGGGUaCa------UG-GUGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 31435 0.68 0.752205
Target:  5'- gGCCCGggcgcgcuCCGCCucggcGCGcGCGCCGCGc -3'
miRNA:   3'- -CGGGUacau----GGUGG-----UGUaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 31544 0.67 0.789711
Target:  5'- cGUCCAgcccGCCGCCugGggggcggGCGuCCGCGg -3'
miRNA:   3'- -CGGGUaca-UGGUGGugUa------CGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 31814 0.69 0.682858
Target:  5'- gGCCCcgGgGCCGCCGC--GCGgCGCu -3'
miRNA:   3'- -CGGGuaCaUGGUGGUGuaCGCgGCGc -5'
23705 3' -56.9 NC_005261.1 + 32037 0.71 0.591052
Target:  5'- cGCCCcc--GCCGCCGCGcUGaCGCCGCc -3'
miRNA:   3'- -CGGGuacaUGGUGGUGU-AC-GCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 32143 0.66 0.833346
Target:  5'- nGCCCuaccggGCCGCCGC---CGCCGCu -3'
miRNA:   3'- -CGGGuaca--UGGUGGUGuacGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 32171 0.71 0.611437
Target:  5'- cGCCCGcg-GCCGCCugGcgcgGcCGCCGCGc -3'
miRNA:   3'- -CGGGUacaUGGUGGugUa---C-GCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 32706 0.69 0.692962
Target:  5'- cGCCCAUGgcgcccacgAUCACCA---GCGCCaGCGa -3'
miRNA:   3'- -CGGGUACa--------UGGUGGUguaCGCGG-CGC- -5'
23705 3' -56.9 NC_005261.1 + 33185 0.67 0.789711
Target:  5'- cGUCCGcuuucCCGCCGCGcGgGCCGCGg -3'
miRNA:   3'- -CGGGUacau-GGUGGUGUaCgCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 33218 0.67 0.824953
Target:  5'- cGUCCAcggGgcCCGCCGC---CGCCGCGg -3'
miRNA:   3'- -CGGGUa--CauGGUGGUGuacGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 33519 0.75 0.352071
Target:  5'- cGUCgAUGUcagcgucgaucGCCGCCGCGUGCGCC-CGg -3'
miRNA:   3'- -CGGgUACA-----------UGGUGGUGUACGCGGcGC- -5'
23705 3' -56.9 NC_005261.1 + 33589 0.66 0.849576
Target:  5'- uGCuCCAgcggGUcCCGcuCCGCAgcgGCGUCGCGg -3'
miRNA:   3'- -CG-GGUa---CAuGGU--GGUGUa--CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 33879 0.68 0.771206
Target:  5'- cGCuCCGUGgcgGCCGCgACG-GCGgCCGCc -3'
miRNA:   3'- -CG-GGUACa--UGGUGgUGUaCGC-GGCGc -5'
23705 3' -56.9 NC_005261.1 + 33947 0.75 0.376076
Target:  5'- gGCCCGcGUcGCCGCCGCcgGCGgCGCc -3'
miRNA:   3'- -CGGGUaCA-UGGUGGUGuaCGCgGCGc -5'
23705 3' -56.9 NC_005261.1 + 34243 0.72 0.51122
Target:  5'- cGCCag-GUcgGCCACCGCGccguccgcggGCGCCGCGc -3'
miRNA:   3'- -CGGguaCA--UGGUGGUGUa---------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 34352 0.67 0.816385
Target:  5'- cGCgCAggaaGUACUGCCGCA-GCGCCuCGg -3'
miRNA:   3'- -CGgGUa---CAUGGUGGUGUaCGCGGcGC- -5'
23705 3' -56.9 NC_005261.1 + 34824 0.78 0.267182
Target:  5'- cCCCGUGccGCCGCCGCccGCGCCGUc -3'
miRNA:   3'- cGGGUACa-UGGUGGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 35022 0.69 0.672712
Target:  5'- cCCCAgcucgGCCGCgCGCcgccGCGCCGCGg -3'
miRNA:   3'- cGGGUaca--UGGUG-GUGua--CGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.