miRNA display CGI


Results 101 - 120 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 35109 0.69 0.682858
Target:  5'- cGCgCCggGUGCCGCgCGCA-GCcCCGCGa -3'
miRNA:   3'- -CG-GGuaCAUGGUG-GUGUaCGcGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 35293 0.66 0.833346
Target:  5'- gGCCCAgcccgGCCAgCGCccccgGCGCCaGCGc -3'
miRNA:   3'- -CGGGUaca--UGGUgGUGua---CGCGG-CGC- -5'
23705 3' -56.9 NC_005261.1 + 35445 0.71 0.611437
Target:  5'- cGCCgcUGcggcgGCgGCCGCggGCGCCGCGg -3'
miRNA:   3'- -CGGguACa----UGgUGGUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 35581 0.73 0.489057
Target:  5'- cGCCCA---GCCGCCGCGcgccggucugcgccUcGCGCCGCGc -3'
miRNA:   3'- -CGGGUacaUGGUGGUGU--------------A-CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 35715 0.72 0.550694
Target:  5'- cGCCCAg----CGCCGCGUcCGCCGCGg -3'
miRNA:   3'- -CGGGUacaugGUGGUGUAcGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 36119 0.69 0.682858
Target:  5'- cGCCCGgucgGCCuGCCGCGccaGCGgCCGCGg -3'
miRNA:   3'- -CGGGUaca-UGG-UGGUGUa--CGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 36766 0.68 0.761763
Target:  5'- cGCCUcucGcGCCgcgGCCGCGUcGCGCCGCa -3'
miRNA:   3'- -CGGGua-CaUGG---UGGUGUA-CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 36807 0.72 0.51122
Target:  5'- cGCgCCGUG-GCCuCCGCGcGCGCCGCc -3'
miRNA:   3'- -CG-GGUACaUGGuGGUGUaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 37000 0.67 0.789711
Target:  5'- cUCCAcg-GCCGCCAgCAgcaGCGCCGCu -3'
miRNA:   3'- cGGGUacaUGGUGGU-GUa--CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 37307 0.69 0.713009
Target:  5'- cGCCCGcg-GCCGCCuGCAgcGCGgCCGCGc -3'
miRNA:   3'- -CGGGUacaUGGUGG-UGUa-CGC-GGCGC- -5'
23705 3' -56.9 NC_005261.1 + 37367 0.66 0.849576
Target:  5'- cGCCUGUGaa-CGCgGCcgGCaGCCGCGc -3'
miRNA:   3'- -CGGGUACaugGUGgUGuaCG-CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 37484 0.66 0.857399
Target:  5'- cGCCgCGc--ACCGCCGCGaGCGUCGCc -3'
miRNA:   3'- -CGG-GUacaUGGUGGUGUaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 37677 0.69 0.672712
Target:  5'- cGCCCGa--GCCGCgGCc-GCGCCGCGc -3'
miRNA:   3'- -CGGGUacaUGGUGgUGuaCGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 37801 0.73 0.472969
Target:  5'- cGCCCAggaGcGCCGCCACGcG-GCCGCGc -3'
miRNA:   3'- -CGGGUa--CaUGGUGGUGUaCgCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 38303 0.69 0.713009
Target:  5'- cGCCCcucgccGCCGCCGC-UGCcGCCGCc -3'
miRNA:   3'- -CGGGuaca--UGGUGGUGuACG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 38377 0.68 0.761763
Target:  5'- cGCCCAUGagcgcgGCCACgACAagGU-CCGCGg -3'
miRNA:   3'- -CGGGUACa-----UGGUGgUGUa-CGcGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 38542 0.74 0.427285
Target:  5'- cGCCCAgcgGcaccgGCCGCCGC--GCGCCGCc -3'
miRNA:   3'- -CGGGUa--Ca----UGGUGGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 38689 0.66 0.857399
Target:  5'- cGCgCCAgcu-CCGCCACGgucGCGCgCGUGg -3'
miRNA:   3'- -CG-GGUacauGGUGGUGUa--CGCG-GCGC- -5'
23705 3' -56.9 NC_005261.1 + 38799 0.72 0.540728
Target:  5'- cGCCCAgcgaGU-CCACCGCGaGCGUCGUc -3'
miRNA:   3'- -CGGGUa---CAuGGUGGUGUaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 39623 0.66 0.849576
Target:  5'- uGCCgc--UGCCGCCGCcgGCcgccgGCCGCGc -3'
miRNA:   3'- -CGGguacAUGGUGGUGuaCG-----CGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.