miRNA display CGI


Results 121 - 140 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23705 3' -56.9 NC_005261.1 + 40213 0.66 0.872429
Target:  5'- uGUCCuUGgaGCCGCCGgGgGCGCgGCGg -3'
miRNA:   3'- -CGGGuACa-UGGUGGUgUaCGCGgCGC- -5'
23705 3' -56.9 NC_005261.1 + 40600 0.68 0.761763
Target:  5'- aGCCCcgGgccggcgACCGuCCGCcgGCGCCcccGCa -3'
miRNA:   3'- -CGGGuaCa------UGGU-GGUGuaCGCGG---CGc -5'
23705 3' -56.9 NC_005261.1 + 41019 0.68 0.780525
Target:  5'- gGCCCGggcGUGUCGCCGCGcgGCuuucgcgccuGCCGCGg -3'
miRNA:   3'- -CGGGUa--CAUGGUGGUGUa-CG----------CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 41228 0.66 0.872429
Target:  5'- gGCCCGgccggcuggGUcgcgggcgccgGCCggGCCGCGgccggaaGCGCCGCGg -3'
miRNA:   3'- -CGGGUa--------CA-----------UGG--UGGUGUa------CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 41285 0.69 0.713009
Target:  5'- gGCgCCAgccggGCCGCgGCcggagGCGCCGCGg -3'
miRNA:   3'- -CG-GGUaca--UGGUGgUGua---CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 42215 0.68 0.752205
Target:  5'- uGCCCAUGUuugcgacguacgACCACgCGCAcUGgGCgCGCc -3'
miRNA:   3'- -CGGGUACA------------UGGUG-GUGU-ACgCG-GCGc -5'
23705 3' -56.9 NC_005261.1 + 42377 0.77 0.286733
Target:  5'- uGCCCGUGcagauCCugCACGUGCucaacGCCGCGu -3'
miRNA:   3'- -CGGGUACau---GGugGUGUACG-----CGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 42669 0.68 0.742541
Target:  5'- cGCUCG-GgcCCGCCGCGcucagcgGCGCCGCc -3'
miRNA:   3'- -CGGGUaCauGGUGGUGUa------CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 43386 0.66 0.869491
Target:  5'- cGCCCugcgGggcgggcuauaaaGCCGCCGCcgGCGgCGCu -3'
miRNA:   3'- -CGGGua--Ca------------UGGUGGUGuaCGCgGCGc -5'
23705 3' -56.9 NC_005261.1 + 43505 0.73 0.454391
Target:  5'- gGCCCGcGUGCaGCCACAcGCGCgCGCu -3'
miRNA:   3'- -CGGGUaCAUGgUGGUGUaCGCG-GCGc -5'
23705 3' -56.9 NC_005261.1 + 43774 0.77 0.273577
Target:  5'- cGCCCuc--GCCGCCGCcgGCGCCGUc -3'
miRNA:   3'- -CGGGuacaUGGUGGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 44144 0.66 0.872429
Target:  5'- -aCCAcGaugGCCACggCGCAgggcgGCGCCGCGa -3'
miRNA:   3'- cgGGUaCa--UGGUG--GUGUa----CGCGGCGC- -5'
23705 3' -56.9 NC_005261.1 + 44469 0.73 0.482401
Target:  5'- cGCCCGcgggcuUGcGCCGuCCGCggGCGCCGCc -3'
miRNA:   3'- -CGGGU------ACaUGGU-GGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 44563 0.67 0.824953
Target:  5'- cGCCgCA---GCCGCCGgGcgGCGCCGCc -3'
miRNA:   3'- -CGG-GUacaUGGUGGUgUa-CGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 44601 0.68 0.752205
Target:  5'- uGCCCccGggacgccgcGCCGCCGC--GCGCCGCc -3'
miRNA:   3'- -CGGGuaCa--------UGGUGGUGuaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 44875 0.69 0.672712
Target:  5'- gGCgCCGUGUugGCCGcgaggaagcCCGCGcGCGCCGCc -3'
miRNA:   3'- -CG-GGUACA--UGGU---------GGUGUaCGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 45081 0.77 0.298304
Target:  5'- gGCCCGcguuguuagcggagUGUGCCACCACGUcCGCgCGCa -3'
miRNA:   3'- -CGGGU--------------ACAUGGUGGUGUAcGCG-GCGc -5'
23705 3' -56.9 NC_005261.1 + 46204 0.67 0.798756
Target:  5'- gGCCCGac-GCCGCCGCuggcGCaGCCGCc -3'
miRNA:   3'- -CGGGUacaUGGUGGUGua--CG-CGGCGc -5'
23705 3' -56.9 NC_005261.1 + 46914 0.69 0.692962
Target:  5'- uCCCAgcgGcGCCGCCGCGgcCGCCGCc -3'
miRNA:   3'- cGGGUa--CaUGGUGGUGUacGCGGCGc -5'
23705 3' -56.9 NC_005261.1 + 46984 0.68 0.771206
Target:  5'- cGCCCGgcgaggacGUggagcgcgacGCCGCCGCGgugaacGCGCUGCGc -3'
miRNA:   3'- -CGGGUa-------CA----------UGGUGGUGUa-----CGCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.